Locus 9637

Sequence ID 3R_DroMel_CAF1
Location 25,467,499 – 25,467,595
Length 96
Max. P 0.563570
window15409

overview

Window 9

Location 25,467,499 – 25,467,595
Length 96
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 84.29
Mean single sequence MFE -37.98
Consensus MFE -26.80
Energy contribution -27.72
Covariance contribution 0.92
Combinations/Pair 1.18
Mean z-score -2.13
Structure conservation index 0.71
SVM decision value 0.06
SVM RNA-class probability 0.563570
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25467499 96 - 27905053
-GAACGCCACCACCUCCGCCACCAGCGCCACCUUGAGUCCUGCGAUGGUGGCAACAGGAGGUGGCGGCACCACCACGCCGGAACCCGAUCUCUCCGA
-....(((.(((((((((((((((.(((.((.....))...))).)))))))....)))))))).)))..........((((..........)))). ( -43.00)
>DroSec_CAF1 150521 96 - 1
-GAACGCCACCACCUCCGCCACCAGCACCACCUUGAGUCCUGCGAUGGUGGCAACAGGAGGUGGCGGCACCACCACGCCGGAACCCGAUCUCUCCGA
-....(((.((((((((((((((((((..((.....))..)))..)))))))....)))))))).)))..........((((..........)))). ( -41.40)
>DroSim_CAF1 152509 96 - 1
-GAACGCCACCACCUCCGCCACCAGCACCACCUUGAGUCCUGCGAUGGUGGCAACAGGAGGUGGCGGCACCACCACGCCGGAACCAGAUCUCUCCGA
-....(((.((((((((((((((((((..((.....))..)))..)))))))....)))))))).)))..........((((..........)))). ( -41.40)
>DroEre_CAF1 157727 96 - 1
-GAACGCCACCACCGCCGCCACCAGCACCACCUUGAGUACGGCGAUGGCGGGAGCAGGAGGUGGCGGCACCACCACGCCGGAACCCGAUCUGUCCGA
-...(((((....(((((..(((((.......))).)).))))).)))))(((.((((.(((..((((........))))..)))...))))))).. ( -34.60)
>DroYak_CAF1 162601 96 - 1
-GAACGCCACCACCUCCGCCACCAGCACCACCUUGAGUCCGGGCUUGGUGGGAACAGGAGGUGGUAGCACCACCACGCCGGAACCCGAUCUAUCCGA
-....((.(((((((((.((((((((.((...........)))).)))))).....))))))))).))..........((((..........)))). ( -38.00)
>DroAna_CAF1 159507 91 - 1
GGGGCGGAGCACUCAAUGCCACCAGCACCACCUUGAGCCCCACGACG------AGCGGAGUGGGCUUCUCCACCACACCGGAACCGGAUCUCUCCGA
((((.((((..((((((((.....))).....))))).(((((..(.------...)..)))))...)))).))...(((....)))......)).. ( -29.50)
>consensus
_GAACGCCACCACCUCCGCCACCAGCACCACCUUGAGUCCUGCGAUGGUGGCAACAGGAGGUGGCGGCACCACCACGCCGGAACCCGAUCUCUCCGA
.....(((.((((((((((.....)).(((((..............))))).....)))))))).)))..........((((..........)))). (-26.80 = -27.72 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:52 2006