| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,449,636 – 25,449,747 |
| Length | 111 |
| Max. P | 0.500000 |
| Location | 25,449,636 – 25,449,747 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 80.11 |
| Mean single sequence MFE | -30.52 |
| Consensus MFE | -21.74 |
| Energy contribution | -21.78 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.71 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25449636 111 + 27905053 AGUUCGCAAUCGAGUAUAUUUCUGUGUGCAGGUCCUGAAUCGAAAGGAUAGG-GCCACCGCGGAGUGGGAGGGGGACGGGAAGCCAAGCUGAAAACAGCGGCAGCAGCGGAA ..(((((...........(((((((.(.(.(((((((..((....)).))))-))).((((...))))...).).)))))))(((..((((....)))))))....))))). ( -39.90) >DroSec_CAF1 132479 99 + 1 AGUUCGCA-UCGAGUAUAUUUCUGUGUGCAGGUCCUGAAACGCAAGGAUACG-GAUA----------G-AGGGGUAGGUGGAGCCAAGCUGAAAACAGCGGCAGCAGCGGAA ..(((((.-((.(...(((..((.(((.(..(((((........)))))..)-.)))----------.-))..)))..).))(((..((((....)))))))....))))). ( -32.50) >DroSim_CAF1 134317 101 + 1 AGUUCGCAAUCGAGUAUAUUUCUGUGUGCAGGUCCUGAAUCGCAAGGAUGGU-GAUA----------AAAGGGGGAGGUGGAGCCAAGCUGAAAACAGCGGCAGCAGCGGAA ..(((((.(((..((((((....))))))...((((..(((((.......))-))).----------..))))...)))...(((..((((....)))))))....))))). ( -28.10) >DroEre_CAF1 138937 105 + 1 AGUUUGCAAUCGAGUAUAUUUCUGUGUGCAGCUCCUGAAUCGAAAGGACAAGGGAUAUA--CUAGCG-----GGAAGGGGGAGAGAAGCUGAAAACAGCGUCAGCGGCGGAA ..(((((..((((((((((..((.(((.(((...)))..((....)))))))..)))))--))..))-----)..............(((((........))))).))))). ( -25.60) >DroYak_CAF1 142955 110 + 1 AGUUUGCAAUCGAGUAUAUUUCUGUGUGCAGGUCCUGAAACGAAAGGAUGAGGGGUACA--AAACCGGUGGGGAAAGGGGGAGCCAAACUGAAAACAGCGGCAACGGCGGAA ..(((((..............((((...(((..(((.(..(....)..).)))(((.(.--...((..........))..).)))...)))...))))((....))))))). ( -26.50) >consensus AGUUCGCAAUCGAGUAUAUUUCUGUGUGCAGGUCCUGAAUCGAAAGGAUAAG_GAUA______A__GG_AGGGGAAGGGGGAGCCAAGCUGAAAACAGCGGCAGCAGCGGAA ..(((((......((((((....))))))..(((((........))))).................................(((..((((....)))))))....))))). (-21.74 = -21.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:45 2006