Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,443,624 – 25,443,716 |
Length | 92 |
Max. P | 0.542641 |
Location | 25,443,624 – 25,443,716 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.22 |
Mean single sequence MFE | -19.87 |
Consensus MFE | -15.53 |
Energy contribution | -15.93 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.44 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542641 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25443624 92 - 27905053 CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUUUGGAGCACCCAGUGCCCAUCCCAC---------------UUCUCCACCCCCAACGACGACCUUGGCC ....((((((((.....))))..(((((............(((((.....((((.......)))---------------).)))))........)))))..)))).. ( -17.85) >DroSec_CAF1 126574 92 - 1 CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUGUGGAGCACCCAGUGCCCCUCCCAC---------------UGCUCCGCCCCCAACGACGACCUUGGCC ....((((((((.....))))..((((((((((.....))))))))...(((((.......)))---------------)).............)).....)))).. ( -25.90) >DroSim_CAF1 128428 92 - 1 CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAGUGCCCCUCCCCC---------------UGCUCCACCCCCAACGACGACCUUGGCC ....((((((((.....))))..(((((............(((((((.................---------------)))))))........)))))..)))).. ( -19.98) >DroEre_CAF1 132940 74 - 1 CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCA---------------------------------GCUCCUCCACCCACGACGACCUUGGCC ....((((((((.....))))..(((((............(((((..---------------------------------....))))).....)))))..)))).. ( -15.83) >DroYak_CAF1 136960 107 - 1 CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAAUGCCCCUCCCAGUGCUCAUCCUCCCAUUGCUCCUCAUCCCACGACGACCCUGGCC ....(((.((((.....))))..(((((..(((.........((((((...............))))))..........)))............)))))...))).. ( -19.81) >consensus CCAUCCAAGCGCAUUACGCGCAUUCGUUCCGCAUUUCUUCUGGAGCACCCAGUGCCCCUCCCAC_______________UGCUCCACCCCCAACGACGACCUUGGCC ....((((((((.....))))..(((((.............(((((..................................))))).........)))))..)))).. (-15.53 = -15.93 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:42 2006