Locus 963

Sequence ID 3R_DroMel_CAF1
Location 3,151,524 – 3,151,643
Length 119
Max. P 0.897425
window1541

overview

Window 1

Location 3,151,524 – 3,151,643
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 97.21
Mean single sequence MFE -22.07
Consensus MFE -20.56
Energy contribution -20.37
Covariance contribution -0.19
Combinations/Pair 1.07
Mean z-score -1.24
Structure conservation index 0.93
SVM decision value 1.00
SVM RNA-class probability 0.897425
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3151524 119 + 27905053
CAUAAAUGGCAAUCAACAGACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGC-CACCACAACAAGUAAUCAGGAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............)))))))))....-....((.....)).))))))))).)))). ( -21.62)
>DroPse_CAF1 24681 120 + 1
AAUAAAUGGCAAUCAACGUACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGCCCACCACAACAAGCAAUCAGGAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............))))))))).(((............)))))))))))).)))). ( -23.42)
>DroSec_CAF1 26618 119 + 1
CAUAAAUGGCAAUCAACAGACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGC-CACCACAACAAGUAAUCAGGAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............)))))))))....-....((.....)).))))))))).)))). ( -21.62)
>DroSim_CAF1 27932 119 + 1
CAUAAAUGGCAAUCAACAGACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGC-CACCACAACAAGUAAUCAGAAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............)))))))))....-....((.....)).))))))))).)))). ( -22.02)
>DroPer_CAF1 24840 120 + 1
AAUAAAUGGCAAUCAACGUACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGCCCACCACAACAAGCAAUCAGGAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............))))))))).(((............)))))))))))).)))). ( -23.42)
>DroEre_CAF1 28758 119 + 1
CAUAAAUGGCAAUCAACAGACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGC-CACCACAACAAGUAAUCAGGAGCCGACAA
......(((((((((..((.(((.....(((.....)))...)))))...)))).(((((((((.............))))))))).)))-))........................... ( -20.32)
>consensus
CAUAAAUGGCAAUCAACAGACAAUCAAUGGGUUAAACCCUUUUUGCUUUAUGAUCCGAAAACAAUUUAAGCUUUUAUUUGUUUUUGAUGC_CACCACAACAAGUAAUCAGGAGCCGCCAA
......((((..................(((.....))).....(((((.((((.(((((((((.............))))))))).(((............)))))))))))).)))). (-20.56 = -20.37 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:44 2006