Locus 9622

Sequence ID 3R_DroMel_CAF1
Location 25,408,840 – 25,408,939
Length 99
Max. P 0.748516
window15380

overview

Window 0

Location 25,408,840 – 25,408,939
Length 99
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 69.38
Mean single sequence MFE -25.87
Consensus MFE -11.11
Energy contribution -12.35
Covariance contribution 1.24
Combinations/Pair 1.36
Mean z-score -1.80
Structure conservation index 0.43
SVM decision value 0.47
SVM RNA-class probability 0.748516
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25408840 99 + 27905053
UGCCCAGUUGGCUAUUAUCUAGCUGGCUUUCUG-AGAACUAAG----------------CUAGUUAGCUAGACAUGAUAUAAAGAAACUCCAUGAUUCUUCAAAACAAAUAUGAAG
.(((.....))).....(((((((((((..((.-.......))----------------..)))))))))))((((..............))))...(((((.........))))) ( -22.74)
>DroSec_CAF1 92775 99 + 1
UGCCAAGUUGGCUUUUAUCUAGCUGGCUUUCUG-AGGAGUAAG----------------CUAGUUAGUUAGACAUGAUAUAAAGAAACUCCUUGACGCUUUGGGAUAGAUAUCAAG
.(((.....))).((((.(((((((((((.((.-...)).)))----------------)))))))).))))..((((((........((((.........))))...)))))).. ( -26.10)
>DroSim_CAF1 93221 99 + 1
UGCCCAGCUGGCUUUUAUCUAGCUGGCUUUCUG-AGGAGUAAG----------------CUAGGUAGUUAGACAUGAUAUAAAGAAACUCCUUGAGGCUUCAAGGCUAAAAUUAAG
.((((((((((.......)))))))(((((..(-((((((...----------------((..(((.(((....))))))..))..)))))))))))).....))).......... ( -27.80)
>DroEre_CAF1 96759 116 + 1
AGCCGAUUUGGCUUUUAUCUAGCUAGCCUUAGUUCAUAGUUACUAAGUUACUUAGUCACUUAGUGGGUUAAACAUGUUAUGAAGCAACUCUUGGAUGUUUUAGAACAAGUAUUGGC
.((((((((((((.......))))))..((((..((((((.((((((...)))))).)))..)))..))))((.((((.(((((((.(.....).))))))).)))).)))))))) ( -29.90)
>DroYak_CAF1 100530 99 + 1
UGCCAAGUUGGCUUUUAUCUAGCUAGUCUUUAU-AAUAGUUGG----------------UUAGUUAGUUAGACAUUUCAUGACGAAACUGUUUGAUUCUUUAGGACAAAUAUUGGC
.(((((..(((((.......)))))(((((...-((.(((..(----------------.(((((.((((((....)).))))..))))).)..))).)).))))).....))))) ( -22.80)
>consensus
UGCCAAGUUGGCUUUUAUCUAGCUGGCUUUCUG_AGGAGUAAG________________CUAGUUAGUUAGACAUGAUAUAAAGAAACUCCUUGAUGCUUUAGGACAAAUAUUAAG
.(((.....))).....(((((((((((.................................))))))))))).......(((((((.(.....).))))))).............. (-11.11 = -12.35 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:28 2006