Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,149,488 – 3,149,584 |
Length | 96 |
Max. P | 0.876098 |
Location | 3,149,488 – 3,149,584 |
---|---|
Length | 96 |
Sequences | 4 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 80.94 |
Mean single sequence MFE | -21.62 |
Consensus MFE | -12.52 |
Energy contribution | -14.28 |
Covariance contribution | 1.75 |
Combinations/Pair | 1.00 |
Mean z-score | -2.40 |
Structure conservation index | 0.58 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876098 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3149488 96 + 27905053 UUCAUCACAGAAGCCAGUG--ACGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU .........(((((((.((--(.((((..(((.(((((...(((((((.......)))))))))))).)))..)))).)))))))))).......... ( -24.80) >DroSec_CAF1 24649 84 + 1 --------------CAGUGAGAAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGCAUGUUUUUAUGGUUUUAUUUCUUUAU --------------......(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. ( -17.30) >DroSim_CAF1 25938 84 + 1 --------------CAGUGAGAAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU --------------......(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. ( -19.00) >DroEre_CAF1 26916 93 + 1 UUCAUCGCAGAAGCCC-----AUGACAGACAAUCAGGAAUCGAAUUCGCUUAAUUCCGAGUUUCUUUCUUGGAUGUUUUUAUGGUUUUAUUCCUCUGU ......(((((((.((-----((((.(((((.(((((((..(((((((........)))))))..))))))).))))))))))).))......))))) ( -25.40) >consensus ______________CAGUG__AAGACAGACAAUCAGGAAUCGAAUUCGUUUAUUUCGGAUUUUCUUGCUUGGAUGUUUUUAUGGUUUUAUUUCUUUAU ....................(((((((..(((.(((((...(((((((.......)))))))))))).)))..))))))).................. (-12.52 = -14.28 + 1.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:43 2006