Locus 9617

Sequence ID 3R_DroMel_CAF1
Location 25,403,788 – 25,403,891
Length 103
Max. P 0.825373
window15368

overview

Window 8

Location 25,403,788 – 25,403,891
Length 103
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.96
Mean single sequence MFE -23.67
Consensus MFE -12.73
Energy contribution -12.45
Covariance contribution -0.28
Combinations/Pair 1.18
Mean z-score -2.38
Structure conservation index 0.54
SVM decision value 0.70
SVM RNA-class probability 0.825373
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25403788 103 - 27905053
--------AAUAGUAAACGGAUAUUUCGCACAACAACGCUGGCGAAACUUU-----UUGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUACAUAACAU----AUC
--------....(((((((((......(.((((((((...((.(((((...-----..))))))))))))))))...(((......)))........))))))))).......----... ( -26.00)
>DroVir_CAF1 103984 97 - 1
--------AAUAGUUGGCGGAAAUUUUGCACG--AACGC-----AAACUUU----UUAGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUCUUCCGUUUACAUAACAG----GCA
--------....((..((((((....((.(((--((((.-----(((((..----..)))))..(((((....))))).......)))))))))..))))))..)).......----... ( -20.90)
>DroGri_CAF1 101050 104 - 1
UAGUAGUGAAUGGUGAGCGGAAAUUUUGCAGC--AACGC-----AAACUUU---UUUUGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUGCAUAGCAG----C--
..((((.((((((..((((((....(((((((--((((.-----((((...---....)))).).))))))).))).......))))))..)))))).....)))).......----.-- ( -25.50)
>DroWil_CAF1 111109 105 - 1
--------AAUAGUCAACGGAAAUUUCGCACA---ACGCAAA-AAAACUUUUGC---UGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUACAUAACAACAACAAC
--------....((.((((((((....(((.(---(((((((-(....))))))---.......(((((....)))))........))))))...)))))))).)).............. ( -20.50)
>DroMoj_CAF1 105125 99 - 1
--------AAUUGUCAGCGGAAAUUUUGCACG--AACGC-----AAACUUUU--UUUUGCUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUACAUAACAG----GCA
--------...(((.((((((((...((.(((--(((((-----(((.....--.)))))....(((((....)))))........)))))))).)))))))).)))......----... ( -24.60)
>DroPer_CAF1 94935 105 - 1
--------AAUAGUAAACGGAAAUUUCGCACA---CCGCAGGCGAAACUUUUGCUGUUGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUGCAUAACAU----AUC
--------....(((((((((((....((...---..)).((((((.........((((((..(.......)..)))))).......))))))..))))))))))).......----... ( -24.49)
>consensus
________AAUAGUAAACGGAAAUUUCGCACA__AACGC_____AAACUUU____UUUGUUUCCUGUUGUUGUCAAUAACUAAUUCGUUUGUCAUUUUCCGUUUACAUAACAG____ACC
............((.((((((((....((........)).........................(((((....))))).................)))))))).)).............. (-12.73 = -12.45 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:18 2006