Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,400,263 – 25,400,354 |
Length | 91 |
Max. P | 0.702279 |
Location | 25,400,263 – 25,400,354 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 78.82 |
Mean single sequence MFE | -29.73 |
Consensus MFE | -19.75 |
Energy contribution | -19.58 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.08 |
Mean z-score | -1.42 |
Structure conservation index | 0.66 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.702279 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25400263 91 - 27905053 GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCC--------AGC--CAGUCAGU-GAGUC--CAG-- ...((.((((((..(((((((((((((....)))))))))))))...(((((.(((....----........))).--------)))--))))))).-).)).--...-- ( -28.50) >DroVir_CAF1 99817 79 - 1 GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGU----UUGCAUAUGUCC--------GGUCGCA------------------- ...(((.((((.(((((((((((((((....)))))))))))))((...((.......))----..))...)).))--------)).))).------------------- ( -25.90) >DroGri_CAF1 97162 87 - 1 GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGUUUGUUUGCAUAUGUCC--------GGUCGCAGUC-------------G-- ...(((((.((((((((((((((((((....)))))))))))))((...)).)))))(((......))).......--------)).)))....-------------.-- ( -26.60) >DroSim_CAF1 84572 99 - 1 GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCCGGCCAGUCAGC--CAGUCAGG-GAGUC--AGG-- ......(((((((.(((((((((((((....))))))))))))).(((((((.((((..(----(.((.........)).))..)))--))))))))-).)))--)))-- ( -36.30) >DroMoj_CAF1 101639 79 - 1 AUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCAGU----UUGCAUAUGUCC--------GGUCGCA------------------- ...((((((((((((((((((((((((....)))))))))))))((...)).))))))(.----...)........--------)).))).------------------- ( -28.90) >DroPer_CAF1 91486 95 - 1 GUAGCGCCUGGUCGGAGUGAGAAAUUCUGAUGGGU-UCUUAUUUGCUUGGCUCGGCUUUU----UUGCAUAUGUCC--------GGC--CAGUCAGCAGAGCCCCAGCCC .......(((((((((((.....))))))))((((-(((...(((.((((((.(((....----........))).--------)))--))).))).))))))))))... ( -32.20) >consensus GUAGCGCCUGGCCGGAGUGAGAAAUUCUGAUGGGUUUCUUAUUUGCUUCGCUCGGCCUGU____UUGCAUAUGUCC________GGC__CAGUC_____________G__ ((((.....((((((((((((((((((....)))))))))))))((...)).))))).......)))).......................................... (-19.75 = -19.58 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:17 2006