Locus 9614

Sequence ID 3R_DroMel_CAF1
Location 25,398,379 – 25,398,475
Length 96
Max. P 0.645538
window15365

overview

Window 5

Location 25,398,379 – 25,398,475
Length 96
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 82.15
Mean single sequence MFE -29.82
Consensus MFE -23.09
Energy contribution -21.78
Covariance contribution -1.30
Combinations/Pair 1.32
Mean z-score -1.50
Structure conservation index 0.77
SVM decision value 0.23
SVM RNA-class probability 0.645538
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25398379 96 - 27905053
----------G-GGUCUCCUUUUGUGCUCGAUACAUAAAGGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAUUUCGUGUGGGCCAGAGAGAGACGGCAACAGGGGGU
----------.-.(((((.(((((.((((.((((.....(((((..........))))).......((.....))))))))))))))).)))))(....)....... ( -27.10)
>DroPse_CAF1 91826 104 - 1
UCCACGUCGGG-GGUCUCCUUUUGUGCUGGAUAUAUAAAGGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAAUUUGUGGCAGCCAGAAAGAGAUGCCCAUAAAGA--
........(((-.(((((.(((((.(((...........(((((..........)))))...((((.(......).)))))))))))).))))).))).......-- ( -35.30)
>DroEre_CAF1 86476 96 - 1
----------G-GGUCUCCUUUUGUGCCCGAUACAUAAAGGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAAUUCGUGUGGGCCAGAGAGAGAUGGCAACAGGGGGU
----------.-.(((((.(((((.((((.((((.....(((((..........))))).......((.....))))))))))))))).)))))(....)....... ( -27.90)
>DroYak_CAF1 89559 96 - 1
----------G-GGUCUCCUUUUGUGCCCGAUACAUAAAGGCAUCAAAUUAAAAGUGCCAGCGCCAGGUCAAUUUGUGUGGGCCAGAGAGAGACGGCAACAGGGGGU
----------.-.(((((.(((((.((((...((((((((((((..........))))).((.....))...)))))))))))))))).)))))(....)....... ( -30.10)
>DroAna_CAF1 90213 95 - 1
----------GAGGUCUCCUUUUGUGCUCAAUACAUAAAAGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAUUUUGUGGCAGCCAGAACGGGAUGGCGCCAACGA--
----------..(((...((((((((.......)))))))).))).........((((((.(((((.(......).))))..((.....))).))))))......-- ( -23.20)
>DroPer_CAF1 89104 104 - 1
UCCACGUCGGG-GGUCUCCUUUUGUGCUGGAUAUAUAAAGGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAAUUUGUGGCAGCCAGAAAGAGAUGCCCAUAAAGA--
........(((-.(((((.(((((.(((...........(((((..........)))))...((((.(......).)))))))))))).))))).))).......-- ( -35.30)
>consensus
__________G_GGUCUCCUUUUGUGCUCGAUACAUAAAGGCAUCAAAUUAAAAGUGCCAACGCCAGGUCAAUUUGUGGCAGCCAGAAAGAGAUGGCAACAAGGA__
.............(((((.(((((.((((..........(((((..........))))).....((.(......).)).))))))))).)))))............. (-23.09 = -21.78 +  -1.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:16 2006