Locus 9613

Sequence ID 3R_DroMel_CAF1
Location 25,395,988 – 25,396,087
Length 99
Max. P 0.813496
window15364

overview

Window 4

Location 25,395,988 – 25,396,087
Length 99
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 80.54
Mean single sequence MFE -25.45
Consensus MFE -22.14
Energy contribution -22.00
Covariance contribution -0.14
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 0.66
SVM RNA-class probability 0.813496
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25395988 99 - 27905053
UAUUUUCAUAGUUUU-------AAGAUGGUUUUUCUUGCAGUGCCACCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
..........((.((-------(((.((((...(((.(((((.(((((.....)))))......((((....)))))))))))).)))))))))....))...... ( -28.30)
>DroSec_CAF1 80069 106 - 1
UAUUAUCAAAGUUUUAGAGAUUACGAUGAUUUUUCUUGCAGUGCACUCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
..........((...(((((((.....)))))))...)).(((((((((.......))))).((((((..(((......)))....))))))......)))).... ( -26.30)
>DroSim_CAF1 80313 106 - 1
UAUAAUCGGAGUUUUUAAGAUUAAGAUGAUUUUUCUUGCAGUGCACUCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
.......(((((((.(((((..((.....))..))))).))...)))))...(((((((((.((((((..(((......)))....)))))).))))))).))... ( -27.20)
>DroEre_CAF1 84021 98 - 1
UACC--------UUUAGAGACAAUGAUCGUUUUUCUUACGGUGCACCCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
.(((--------...(((((.(((....))))))))...)))(((....)))(((((((((.((((((..(((......)))....)))))).))))))).))... ( -25.60)
>DroYak_CAF1 87158 92 - 1
UAUC--------U------ACAAUACACACUUUUCUCACAGUGCACCCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
....--------.------.....................(((((((......)))(((((.((((((..(((......)))....)))))).))))))))).... ( -23.20)
>DroAna_CAF1 87822 90 - 1
UAUU----------UA------AAAAUAAAACUUUUUCCAGUGCACUUCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
....----------..------................((((........))))(((((((.((((((..(((......)))....)))))).)))))))...... ( -22.10)
>consensus
UAUU________UUUA___A__AAGAUGAUUUUUCUUGCAGUGCACCCCUGCUGGUGGAGUCAAGUGGAAUGCCAUGCUGCAGAUGCCACUUAAUUUCGCACAAAA
......................................((((........))))(((((((.((((((..(((......)))....)))))).)))))))...... (-22.14 = -22.00 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:15 2006