Locus 9611

Sequence ID 3R_DroMel_CAF1
Location 25,381,766 – 25,381,864
Length 98
Max. P 0.749225
window15361

overview

Window 1

Location 25,381,766 – 25,381,864
Length 98
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 79.73
Mean single sequence MFE -36.27
Consensus MFE -22.35
Energy contribution -22.55
Covariance contribution 0.20
Combinations/Pair 1.24
Mean z-score -1.81
Structure conservation index 0.62
SVM decision value 0.47
SVM RNA-class probability 0.749225
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25381766 98 - 27905053
UCUUUCGCUCUCGCUU-CAGUGUGGUGAGUUUGCCGCACUCUUGCCGUACAGACAGAGAUGGUGUAGCUGCCCCGCAGUAUAGCCGUCCCUGUCGCACG
......((....((..-.((((((((......))))))))...))......(((((.((((((...(((((...)))))...)))))).)))))))... ( -39.70)
>DroSec_CAF1 66190 98 - 1
UCUUUCGCUCUCGCCU-CAGUGUGGUGAGUUUGCCGCACGCUUGCCGAGCAGACAGAGAUGGUGUUGCUGCCCCGCAGUAUAGCCGUCCCUGUCGCACG
......((((..((..-..(((((((......)))))))....)).)))).(((((.((((((..((((((...))))))..)))))).)))))..... ( -43.90)
>DroSim_CAF1 65515 98 - 1
UCUUUCGCUCUCGCUU-CAGUGUGGUGAGUUUGCCGCACUCUUGCCGAGCAGACAGAGAUGGUGUUGCUGGCCCGCAGUAUAGCCGUCCCUGUCGCACG
......((((..((..-.((((((((......))))))))...)).)))).(((((.((((((..(((((.....)))))..)))))).)))))..... ( -43.30)
>DroEre_CAF1 70037 93 - 1
UCUUUCGCUCUCGCUU-CAGUGUGGUGAGUUUGCCGUGCUCUUG-----CAGACAGAGAUGGGCUAGCACCCCCACAGUAUAGCCGUCCCUGUCGCACG
......((....((..-.((..((((......))))..))...)-----).(((((.(((((.(((..((.......)).)))))))).)))))))... ( -30.90)
>DroYak_CAF1 72074 93 - 1
UCUUUCGCUCUCGCUU-CAGUGUGGUGAGUUUGCCGCACUCUUG-----CAGACAGAGAUGGUGUAGCACCCCCAUAGUAUGGCCGUCCCUGUCGCACG
......((....((..-.((((((((......))))))))...)-----).(((((.((((((...((.........))...)))))).)))))))... ( -32.70)
>DroPer_CAF1 70755 81 - 1
GAC-UCUGUCUCGCUUCCAGUGUGGUGAGUUUU-----------------GGACAGAGACGGCUAUACGCCGGCGCACAGUAGCUGUCCCGCUCGCACG
..(-(((((((.((((((.....)).))))...-----------------)))))))).((((.....))))(((.((((...))))..)))....... ( -27.10)
>consensus
UCUUUCGCUCUCGCUU_CAGUGUGGUGAGUUUGCCGCACUCUUG_____CAGACAGAGAUGGUGUAGCUCCCCCGCAGUAUAGCCGUCCCUGUCGCACG
......((.((((((........))))))...)).................(((((.((((((...((.........))...)))))).)))))..... (-22.35 = -22.55 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:12 2006