Locus 9610

Sequence ID 3R_DroMel_CAF1
Location 25,376,286 – 25,376,376
Length 90
Max. P 0.685301
window15360

overview

Window 0

Location 25,376,286 – 25,376,376
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 79.02
Mean single sequence MFE -27.67
Consensus MFE -10.29
Energy contribution -9.73
Covariance contribution -0.55
Combinations/Pair 1.26
Mean z-score -2.72
Structure conservation index 0.37
SVM decision value 0.32
SVM RNA-class probability 0.685301
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25376286 90 + 27905053
-GAUUCGGUGUUUGCCUUCAAGGAAGCUCCGGAUUUGUACGCAUAAAGCGUGCAAUUAAGCUGUAAUUAAGCGGCACAAAGGCA--------GGCCGAC
-...(((((..(((((((...((.....))....((((((((.....))))))))....(((((......)))))...))))))--------)))))). ( -33.10)
>DroPse_CAF1 67760 86 + 1
UGAAUC--AGUUUCCUUUAUGGGAAGCUGAAAAUUUGUUCGUCUAAAGCG--CAAUUAAGUUGUAAUUAAGCGAAACAAAGAC---------GGCCGAC
....((--((((((((....))))))))))....(((..(((((....((--((((((.....)))))..)))......))))---------)..))). ( -26.00)
>DroEre_CAF1 64714 98 + 1
-GAUUUGGUGUUUGCCUUCAAGGAAGCUGCGAAUUUGUACGCAUAAGGCGUGCAAUUAAGCUGUAAUUAAGCGGCACAAAGGCAGGCCGACAAGCCGAC
-...((((((((((((((................((((((((.....))))))))....(((((......)))))...)))))))))......))))). ( -31.50)
>DroYak_CAF1 66335 90 + 1
-GAUUUGCUGUUUGCCUUCAAGGAAGCUGGGAAUUUGUACGCAUAAAGCGUACAAUUAAGCUGUAAUUAAGCGGCACAAAGGCA--------AGCCGAC
-......(.(((((((((................((((((((.....))))))))....(((((......)))))...))))))--------))).).. ( -29.10)
>DroAna_CAF1 67425 91 + 1
-GAUUUGGU-UUUCCCUUAAAGGAAGCUGAAAAUUUGUACGCAUAAAGCG--CAAUUAAGUUGUAAUUAAGCAGCACAAAGACC----AGUUCGCCGAC
-...(((((-.((((......))))((((....(((((.(((.....)))--.......(((((......))))))))))...)----)))..))))). ( -20.30)
>DroPer_CAF1 64954 86 + 1
UGAAUC--AGUUUCCUUUAUGGGAAGCUGAAAAUUUGUUCGUCUAAAGCG--CAAUUAAGUUGUAAUUAAGCGAAACAAAGAC---------GGCCGAC
....((--((((((((....))))))))))....(((..(((((....((--((((((.....)))))..)))......))))---------)..))). ( -26.00)
>consensus
_GAUUCGGUGUUUCCCUUAAAGGAAGCUGAAAAUUUGUACGCAUAAAGCG__CAAUUAAGCUGUAAUUAAGCGGCACAAAGACA________GGCCGAC
.........((((.((.....))))))......(((((.(((.....))).........(((((......))))))))))................... (-10.29 =  -9.73 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:11 2006