Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,147,976 – 3,148,073 |
Length | 97 |
Max. P | 0.756553 |
Location | 3,147,976 – 3,148,073 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -18.93 |
Consensus MFE | -14.57 |
Energy contribution | -14.20 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.08 |
Mean z-score | -1.86 |
Structure conservation index | 0.77 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.756553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3147976 97 + 27905053 GAUUUCCGCAGCGCGCAGAACAAAUCAAAUCAAUUGCCCGCAAUUAAUAACACCAAUUCGGGCCCAUUGAUCCAGACUGCGACAGCAUUUCAUUAUU ..........((.(((((......((..((((((.(((((.((((.........)))))))))..))))))...)))))))...))........... ( -21.70) >DroSec_CAF1 23138 97 + 1 GAUUUACGCAGCUCGCAGAACAAAUCAAAUCAAUUGCUCGCAAUUAAUAACACCAAUUCGGGCCCAUUGAUCCAGACUGCGACAGCAUUUCAUUAUU .......((.(.((((((......((..((((((.(((((.((((.........)))))))))..))))))...))))))))).))........... ( -19.00) >DroSim_CAF1 24436 97 + 1 GAUUUACGCAGCUCGCAGAACAAAUCAAAUCAAUUGCUCGCAAUUAAUAACACCAAUUCGGGCCCAUUGAUCCAGACUGCGACAGCAUUUCAUUAUU .......((.(.((((((......((..((((((.(((((.((((.........)))))))))..))))))...))))))))).))........... ( -19.00) >DroEre_CAF1 25230 81 + 1 GAUUU----------------GAAUCAAAUCAAUUGCCCGCAAUUAAUAACACCAAUUCGGGCCCAUUGAUCCAGACUGCGACAGCAUUUCAUUAUU ....(----------------(((....((((((.(((((.((((.........)))))))))..))))))......(((....))).))))..... ( -16.00) >consensus GAUUUACGCAGCUCGCAGAACAAAUCAAAUCAAUUGCCCGCAAUUAAUAACACCAAUUCGGGCCCAUUGAUCCAGACUGCGACAGCAUUUCAUUAUU (((((...(........)...)))))..((((((.(((((.((((.........)))))))))..))))))...((.(((....)))..))...... (-14.57 = -14.20 + -0.37)
Location | 3,147,976 – 3,148,073 |
---|---|
Length | 97 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.86 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -18.20 |
Energy contribution | -18.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.68 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527902 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3147976 97 - 27905053 AAUAAUGAAAUGCUGUCGCAGUCUGGAUCAAUGGGCCCGAAUUGGUGUUAUUAAUUGCGGGCAAUUGAUUUGAUUUGUUCUGCGCGCUGCGGAAAUC ..........(((.(((((((..(..(((((...((((((((((((...))))))).))))).......)))))..)..))))).)).)))...... ( -29.70) >DroSec_CAF1 23138 97 - 1 AAUAAUGAAAUGCUGUCGCAGUCUGGAUCAAUGGGCCCGAAUUGGUGUUAUUAAUUGCGAGCAAUUGAUUUGAUUUGUUCUGCGAGCUGCGUAAAUC .........((((.(((((((..(..(((((..(((((.....)).)))((((((((....)))))))))))))..)..)))))).).))))..... ( -27.00) >DroSim_CAF1 24436 97 - 1 AAUAAUGAAAUGCUGUCGCAGUCUGGAUCAAUGGGCCCGAAUUGGUGUUAUUAAUUGCGAGCAAUUGAUUUGAUUUGUUCUGCGAGCUGCGUAAAUC .........((((.(((((((..(..(((((..(((((.....)).)))((((((((....)))))))))))))..)..)))))).).))))..... ( -27.00) >DroEre_CAF1 25230 81 - 1 AAUAAUGAAAUGCUGUCGCAGUCUGGAUCAAUGGGCCCGAAUUGGUGUUAUUAAUUGCGGGCAAUUGAUUUGAUUC----------------AAAUC .....((((.(((....)))....((((((((..((((((((((((...))))))).))))).))))))))..)))----------------).... ( -23.10) >consensus AAUAAUGAAAUGCUGUCGCAGUCUGGAUCAAUGGGCCCGAAUUGGUGUUAUUAAUUGCGAGCAAUUGAUUUGAUUUGUUCUGCGAGCUGCGUAAAUC ..........(((....)))(((.((((((((..((((((((((((...))))))).))))).)))))))))))....................... (-18.20 = -18.70 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:42 2006