Locus 9609

Sequence ID 3R_DroMel_CAF1
Location 25,374,552 – 25,374,644
Length 92
Max. P 0.567509
window15359

overview

Window 9

Location 25,374,552 – 25,374,644
Length 92
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 81.95
Mean single sequence MFE -35.86
Consensus MFE -20.74
Energy contribution -21.36
Covariance contribution 0.62
Combinations/Pair 1.08
Mean z-score -1.99
Structure conservation index 0.58
SVM decision value 0.07
SVM RNA-class probability 0.567509
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25374552 92 - 27905053
AUACUCCGAAUGCUGGACGAUG---------GGCUAUGUGUGCCAUGGGA---U---------GGAACUUCAGGUCCAGGUCCACGUCCACGUCCAGCUCUCCAUGUUUGGCA
.....((((((((((((((.((---------(((...(((..((.((((.---(---------((....)))..))))))..)))))))))))))))).......)))))).. ( -37.31)
>DroSec_CAF1 59103 92 - 1
AUACUCCGAAUGCUGGACGAUG---------GGCUAUGUGUGCCAUGGGA---U---------GGAUCUUCAAGUCCAGGUCCACGUCCACGUCCAGCUCUCCAUGUUUGUCA
.......((..((((((((.((---------(((...(((..((.((((.---.---------.(.....)...))))))..))))))))))))))))..))........... ( -35.70)
>DroSim_CAF1 59772 92 - 1
AUACUCCGAAUGCUGGACGAUG---------GGCUAUGUGUGCCAUGGGA---U---------GGAACUUGAGGUCCAGGUCCACGUCCACGUCCAGCUCUCCAUGUUUGGCA
.....((((((((((((((.((---------(((...(((..((...(((---(---------..........)))).))..)))))))))))))))).......)))))).. ( -35.01)
>DroYak_CAF1 64478 113 - 1
AUACUCCGAAUGCUGGACGAUGGUCGAGCUGGGCAAUGUGUGCCAUGGGAUGAUGGUGAUGAUGGAACUCCGGGUUCAGGUUUGGGUCCAGGUUGAGCUCUUCAUGUUUGGCA
..........(((..(((.((((..(((((.(((.......(((((......)))))......((....))(((..(......)..)))..))).))))).)))))))..))) ( -35.40)
>consensus
AUACUCCGAAUGCUGGACGAUG_________GGCUAUGUGUGCCAUGGGA___U_________GGAACUUCAGGUCCAGGUCCACGUCCACGUCCAGCUCUCCAUGUUUGGCA
.....((((((((((((((............(((.......))).((((..............(((........))).(.....).)))))))))))).......)))))).. (-20.74 = -21.36 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:11 2006