Locus 9608

Sequence ID 3R_DroMel_CAF1
Location 25,372,875 – 25,372,981
Length 106
Max. P 0.604600
window15358

overview

Window 8

Location 25,372,875 – 25,372,981
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 80.06
Mean single sequence MFE -29.92
Consensus MFE -19.18
Energy contribution -19.02
Covariance contribution -0.16
Combinations/Pair 1.23
Mean z-score -1.48
Structure conservation index 0.64
SVM decision value 0.14
SVM RNA-class probability 0.604600
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25372875 106 - 27905053
AUUGAAAUUUGUGAGCUACUUGGCUUGGGCUUUAUGGCCCGCUAAUUAAUAAAGCCGGAGUCAGUUGGUAGCAGUUA--GUGGGAUAC-AAAUGGUC------AUCCAUGAAAUA
..(((.((((((..((((((((((((.((((((((.............)))))))).))))))...)))))).(((.--....)))))-))))..))------)........... ( -31.02)
>DroPse_CAF1 64526 107 - 1
AUUGAAAUUUGUGAGCUACUUGACUUUGGCUUUAUGGCCCGCUAAUUAAUAAAGCCUCUGUCAGAUGGUCUUGGCCCAUGUGGGGUGGGGAAUG--A------AUCCUUGGUUUA
...........(((((((..((((...((((((((.............))))))))...))))(((..((((.((((.....)))).))))...--.------)))..))))))) ( -30.62)
>DroEre_CAF1 61345 106 - 1
AUUGGAAUUUGUGAGCUACUUGGCUUGGGCUUCAUGGGCUGCUAAUUAAUAAAGCCGGAGUCAGUUGGUAGCAGUUA--GUGGGAUAC-AAAUGGGC------AGCCAUGAAAUA
.......((..((.((((((((((((.(((((.((.............)).))))).))))))...)))))).(((.--.((.....)-)....)))------...))..))... ( -27.52)
>DroYak_CAF1 62783 106 - 1
AUUGAAAUUUGUGAGCUACUUGGCUUGGGCUUUAUGGCCCGCUAAUUAAUAAAGCCGGAGUCAGUUGGUAGCAGUUA--GUGGGAUAC-AAAUGGGC------AUCCAUGAAAUA
.......((..((.((((((((((((.((((((((.............)))))))).))))))...)))))).(((.--.((.....)-)....)))------...))..))... ( -31.42)
>DroAna_CAF1 64053 112 - 1
AUUGAAAUUUGUGAGCUACUUGGCUUUGGCUUUAUGGCUUGCUAAUUAAUAAACCUUGAGUCAGAUGGUACCAGUUA--CUGGAAUAC-CAAUGGAUGAGAGAGUCCUUGAUAUU
.....((((.(..(((((...(((....)))...)))))..).))))............(((((.(((((((((...--))))..)))-))..((((......)))))))))... ( -28.30)
>DroPer_CAF1 61757 107 - 1
AUUGAAAUUUGUGAGCUACUUGACUUUGGCUUUAUGGCCCGCUAAUUAAUAAAGCCUCUGUCAGAUGGUCUUGGCCCAUGUGGGGUGGGGAAUG--A------AUCCUUGGUUUA
...........(((((((..((((...((((((((.............))))))))...))))(((..((((.((((.....)))).))))...--.------)))..))))))) ( -30.62)
>consensus
AUUGAAAUUUGUGAGCUACUUGGCUUGGGCUUUAUGGCCCGCUAAUUAAUAAAGCCGGAGUCAGAUGGUAGCAGUUA__GUGGGAUAC_AAAUGG_C______AUCCAUGAAAUA
..............((((.(((((((.((((((((.............)))))))).))))))).))))....(((.......)))............................. (-19.18 = -19.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:10 2006