| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,369,352 – 25,369,444 |
| Length | 92 |
| Max. P | 0.998305 |
| Location | 25,369,352 – 25,369,444 |
|---|---|
| Length | 92 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.33 |
| Mean single sequence MFE | -15.12 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.50 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.75 |
| SVM decision value | 3.06 |
| SVM RNA-class probability | 0.998305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25369352 92 + 27905053 UCCCCCCCC----CCCUUAAAACCUAUC---AAAAUUUACUAUACUAUAUGUAUUUGUAUAUGCAUAUAGCACUCC-CUUCGAGGGCGAAACAAUCACAU------- .........----...............---.............((((((((((......))))))))))..(.((-(.....))).)............------- ( -14.20) >DroSec_CAF1 53954 91 + 1 UCCCCCACCCAUCCCCCUAAUAACUACC---AAAAUAUA-----CUAUAUGUAGUUGUAUAUGCAUAUGGCACUCC-CUUCGAGGGCGAAACAAUCACAU------- ...........((.((((.((((((((.---........-----......))))))))...(((.....)))....-.....)))).))...........------- ( -14.26) >DroSim_CAF1 54230 96 + 1 UCCCCCACCCCUACCCCUAAUAACUACC---AAAAUAUACUAUACUAUAUGUAGUUGUGUAUGCAUAUGGCACUCC-CUUCGAGGGCGAAACAAUCACAU------- ((.(((.............((((((((.---...(((((......)))))))))))))...(((.....)))....-......))).))...........------- ( -14.80) >DroEre_CAF1 57717 91 + 1 UCCCCCUGC----UCCUCCCAAACUAUUAUG------UA-----CCUCAUGUAUUUGUAUAUGCAUA-GGCACUCCCCUUUGAGGGCGAGACAAUCACAAUCACUUU ......(((----((.(((((((.......(------(.-----(((.((((((......)))))))-)).)).....)))).))).))).)).............. ( -17.20) >consensus UCCCCCACC____CCCCUAAAAACUACC___AAAAUAUA_____CUAUAUGUAGUUGUAUAUGCAUAUGGCACUCC_CUUCGAGGGCGAAACAAUCACAU_______ ((.(((......................................(((((((((........)))))))))...((......))))).)).................. (-11.38 = -11.50 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:09 2006