Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,368,694 – 25,368,784 |
Length | 90 |
Max. P | 0.622706 |
Location | 25,368,694 – 25,368,784 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 77.23 |
Mean single sequence MFE | -21.53 |
Consensus MFE | -6.89 |
Energy contribution | -7.19 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.29 |
Mean z-score | -2.57 |
Structure conservation index | 0.32 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622706 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25368694 90 + 27905053 AAUAAACAUUUGAAGCAAUUUACAAUUCGCCGUGCUCUUCC-UCGAGCGGAAGCAGCUGAAA-----AGUUAAGAGGAAAUAGC-AAUAGUUUAUUA (((((((...((((....))))..........((((.((((-((..((....))((((....-----))))..))))))..)))-)...))))))). ( -25.90) >DroSec_CAF1 53344 90 + 1 AAUAAACAUUUAUAGCAAUUUACAAUUCGCGGCGCUCUUCC-UCGAGCGGAAGCAGCUGAAA-----AGUUAAGAGGAAAUAGC-UAUAGUUUAUUA (((((((...((((((............((...))..((((-((..((....))((((....-----))))..))))))...))-))))))))))). ( -26.20) >DroSim_CAF1 53567 90 + 1 AAUAAACAUUUAUAGCAAUUUACAAUUCGCGGCGCUCUUCC-UCGAGCGGAAGCAGCUGAAA-----AGUUAAGAGGAAAUAGC-AAUAGUUUAUUA (((((((.......(((((.....))).))...(((.((((-((..((....))((((....-----))))..))))))..)))-....))))))). ( -25.20) >DroEre_CAF1 57115 94 + 1 AAUAAACAUUUAUAGCAAUCUACAAUUGGCCGCGCUCUUCU-UCGAGCGGAAGCAGCUGAAAAC-UAAGUUAAGAGGAAAUAGC-ACUAGUUUAUUA (((((((.......((..((.......))..))(((.((((-((..((....))((((......-..))))..))))))..)))-....))))))). ( -21.50) >DroMoj_CAF1 62038 92 + 1 AAUAAACAUUUA-AGAAAUUUACAAUUCGACUCGCUU---A-GCAAACGGAAACAGCUGCAUUUGGCAGCGAAUACUAAACGCCUAACAAUUUAUUA ((((((......-.(((........)))....((.((---(-(.....(....).(((((.....))))).....)))).))........)))))). ( -13.80) >DroAna_CAF1 59999 88 + 1 AAUAAACAUUUGUUAAAGUUAACAAUUUGAUGUGCUCUUCUAUCAAGCGGAAGCAGCUGCAA-----AAGUAA--GGAAACAUU-UAC-UUUCAUUA ......((.((((((....))))))..)).(((((((((((.......))))).))).)))(-----((((((--(....)..)-)))-)))..... ( -16.60) >consensus AAUAAACAUUUAUAGCAAUUUACAAUUCGCCGCGCUCUUCC_UCGAGCGGAAGCAGCUGAAA_____AGUUAAGAGGAAAUAGC_AAUAGUUUAUUA (((((((.......((...............))((((((((.......))))).)))................................))))))). ( -6.89 = -7.19 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:08 2006