| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,365,408 – 25,365,499 |
| Length | 91 |
| Max. P | 0.547576 |
| Location | 25,365,408 – 25,365,499 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 78.19 |
| Mean single sequence MFE | -28.12 |
| Consensus MFE | -14.38 |
| Energy contribution | -16.32 |
| Covariance contribution | 1.95 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.51 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.547576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25365408 91 - 27905053 AAAUUAAAAGUAAACCGCAAACAGGCCGUGGAUAAAUG-----------------GGGAAGCCAGUUAGCCAGUUACCCUGGU------GAACCACCUCGUUGCAGGGUGAUUA .......................((((((......)))-----------------((....)).....)))((((((((((.(------((......)))...)))))))))). ( -21.00) >DroSec_CAF1 50088 108 - 1 AAAUUAUAAGUAAACCGCAAACAGGCCGUGGAUAAAUGGCCAACUUCACCGAUGGGGGAAGCCAGUUAGCCAGUUCCCCUGGU------GAACCACCUCAUUGCAGGGUGAUUG ........(((...((((((...((((((......))))))...(((((((..((((((.((......))...))))))))))------)))........)))).))...))). ( -35.50) >DroSim_CAF1 50300 108 - 1 AAAUUAAAAGUAAACCGCAAACAGGCCGUGGAUAAAUGGCCAACUUCACCAACGGGGGAAGCCAGUUAGCCAGUUCCCCUGGU------GAACCACCUCAUUGCAGGGUGAUUA ........(((...((((((...((((((......))))))...(((((((..((((((.((......))...))))))))))------)))........)))).))...))). ( -36.20) >DroEre_CAF1 51943 94 - 1 AAAUUAAAAGUAAACCGCAAACAGGCCGUGGAUAAAUGUCCAAC------AAUGGGUGAGGCC--------AGUUCGCCUGGA------AAACCACCUCAUUGCAGGGUGAUUG ........................(((.(((((....))))).(------((((((((.(.((--------((.....)))).------...))))).)))))...)))..... ( -23.60) >DroYak_CAF1 53897 94 - 1 AAAUUAAAAGUAAACCGCAAACAGGCCGUGGAUAAAUGGCCAAC------AAUGGGUGAAGCC--------AAAUCCCCUGGC------AAACCAACUCAUUGCAGGGUGAUUG .............(((.......((((((......))))))..(------(((((((...(((--------(.......))))------......))))))))...)))..... ( -26.60) >DroAna_CAF1 56776 102 - 1 AAAUUAAAAGUAAACCGCAAACAGGCCGGAGAUAAAUGGCCAAC------AAUGGGUGAAGUCAGUUA------UCCCCUGGGAAUGGGUAACCGCAUCGAGGAAGGGUGAUUA .............(((.((....(((((........)))))...------..)))))......(((((------((((((.((..(((....)))..)).)))..)))))))). ( -25.80) >consensus AAAUUAAAAGUAAACCGCAAACAGGCCGUGGAUAAAUGGCCAAC______AAUGGGGGAAGCCAGUUA___AGUUCCCCUGGU______GAACCACCUCAUUGCAGGGUGAUUA ..............((.......((((((......))))))............(((((((.............)))))))))...........(((((.......))))).... (-14.38 = -16.32 + 1.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:07 2006