Locus 9603

Sequence ID 3R_DroMel_CAF1
Location 25,363,471 – 25,363,567
Length 96
Max. P 0.551729
window15353

overview

Window 3

Location 25,363,471 – 25,363,567
Length 96
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 87.37
Mean single sequence MFE -28.77
Consensus MFE -25.21
Energy contribution -26.03
Covariance contribution 0.81
Combinations/Pair 1.11
Mean z-score -1.36
Structure conservation index 0.88
SVM decision value 0.04
SVM RNA-class probability 0.551729
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25363471 96 - 27905053
-CAUCA----AAGAGCCCAUCGUCUUGCCCUUCUCUGGGAUCUGGGAUGUGGGAUCUCGGAUCUGGGCUAGGGCAUCGUUGUUAGCCGCAUUGAAGGUGUU
-..(((----(.(.((.((.((...((((((...((.(((((((((((.....))))))))))).))..)))))).)).))...))..).))))....... ( -33.60)
>DroSec_CAF1 48136 89 - 1
-CAUCA----AAAAGCCCUUCGUCUUGCCUUUCUCUGGGAUCUCG-------GAUCUCUGAUCUGGGCUAUGGCAUCGUUGUUAGCCGCAUUGAAGGUGUU
-.....----...(((((((((...(((.....((.((((((...-------)))))).))....(((((..(((....))))))))))).)))))).))) ( -25.90)
>DroSim_CAF1 48417 89 - 1
-CAUCA----AAAAGCCCUUCGUCUUGCCCUUCUCUGGGAUCUCG-------GAUCUCUGAUCUGGGCUAUGGCAUCGUUGUUAGCCGCAUUGAAGGUGUU
-.....----...(((((((((((..((((...((.((((((...-------)))))).))...))))...)))...((.(....).))...))))).))) ( -27.10)
>DroYak_CAF1 51770 94 - 1
CCAUCACAAAAAAACCCCUUCGUCUUGUCCAUUUCUGGGAUCUGG-------GAUCUGAGAUCUGGGCUAUGGCAUCGUUGUUAGCCGCAUUGAAGGUGUU
............(((.((((((((..(((((..(((.(((((...-------))))).)))..)))))...)))...((.(....).))...))))).))) ( -28.50)
>consensus
_CAUCA____AAAAGCCCUUCGUCUUGCCCUUCUCUGGGAUCUCG_______GAUCUCUGAUCUGGGCUAUGGCAUCGUUGUUAGCCGCAUUGAAGGUGUU
.............(((((((((((..((((...(((((((((..........)))))))))...))))...)))...((.(....).))...))))).))) (-25.21 = -26.03 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:05 2006