Locus 9600

Sequence ID 3R_DroMel_CAF1
Location 25,356,386 – 25,356,492
Length 106
Max. P 0.694472
window15347

overview

Window 7

Location 25,356,386 – 25,356,492
Length 106
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 69.43
Mean single sequence MFE -16.84
Consensus MFE -6.32
Energy contribution -7.40
Covariance contribution 1.08
Combinations/Pair 1.30
Mean z-score -1.81
Structure conservation index 0.38
SVM decision value 0.34
SVM RNA-class probability 0.694472
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25356386 106 - 27905053
CGGUUGAUAAGGUGAAAGUCAAUUCGGCAAAAAUGCUAAUGAACUUAGACAAAACUGUCGUUAAAUUCAAAGGGCACAAACUUGUUAAAAGAAAGAAAAGAAAAUU
(..((((((((......(((.....))).....((((..((((.(((((((....))))..))).))))...))))....))))))))..)............... ( -18.40)
>DroSec_CAF1 41119 106 - 1
CGGUUGAUAGGGCGAAAGUCAAUUCGGCAAAAAUGCUAAUGAACUUAGACAAAACUGUCGUUAAAUUCAAAUGGCACAAACUUAUUGAAACAUUAAAAAAAAAAUA
..(((((...(((....)))...))))).....(((((.((((.(((((((....))))..))).))))..))))).............................. ( -20.40)
>DroSim_CAF1 41378 104 - 1
CGGUUGAUAAGACGAAAGUCAAUUCGGCAAAAAUGCUAAUGAACUUAGACAAAACUGUCGUUAAAUUCAAAUGGCACAAACUUAUUGAAAGAUCAAAGAA--AAGU
..(((((...(((....)))...))))).....(((((.((((.(((((((....))))..))).))))..)))))........((((....))))....--.... ( -20.60)
>DroEre_CAF1 41817 81 - 1
CGGUUGAUAAGGUAAAAGUAC-UUCGACAAAAAUGCUAAUGAACUUAGAAACCCAGACUUU-ACAGCCAAAAAGCACAAC-----------------------UCU
.(((((.((((((....((..-....)).......((((.....))))........)))))-))))))............-----------------------... ( -11.60)
>DroYak_CAF1 44443 85 - 1
CGGUUGAUAAGGUGAAGGUACAUUCGGCAAAAAUGCUAAUGAACUUAGACAAAACUGCCCU-UCAAUUAAAAAAAACAAG--------------------AAAAAU
.((((((...(((..((((.((((.((((....)))))))).))))((......)))))..-))))))............--------------------...... ( -13.20)
>consensus
CGGUUGAUAAGGUGAAAGUCAAUUCGGCAAAAAUGCUAAUGAACUUAGACAAAACUGUCGUUAAAUUCAAAAGGCACAAACUU_UU_AAA_A___AA_A_AAAAUU
..(((((...(((....)))...))))).....((((..((((....((((....))))......))))...)))).............................. ( -6.32 =  -7.40 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:38:00 2006