Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,144,218 – 3,144,325 |
Length | 107 |
Max. P | 0.523899 |
Location | 3,144,218 – 3,144,325 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 88.99 |
Mean single sequence MFE | -18.15 |
Consensus MFE | -12.80 |
Energy contribution | -14.42 |
Covariance contribution | 1.62 |
Combinations/Pair | 1.04 |
Mean z-score | -1.57 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523899 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3144218 107 - 27905053 ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCUAUACUAUAUAUGUACUAUAUAUGUAGCUGACA- ....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).- ( -20.87) >DroSec_CAF1 19608 107 - 1 ACUCGUCUUAAUCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUGUGUAGCUGACA- ....(((.....(((.((((........(((((........)))))..........))))..))).............((((((((((...))))))))))..))).- ( -15.97) >DroSim_CAF1 20848 107 - 1 ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUGUGUAGCUGACA- ....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).- ( -20.87) >DroEre_CAF1 21734 96 - 1 ACUCGUCUUGAGCUGCAGACAUCGUCCCAUGACCAUUAUGCACCAUUAGCAUCCAAGUCUCCCAGAUUCUUAUCUAUACUAUA------------AUGUAUCUGACAA ....(((..((((((.((((...(((....)))....((((.......))))....))))..))).)))......((((....------------..))))..))).. ( -14.90) >consensus ACUCGUCUUAAGCUGCAGACAUCGUCCCAUGACCAUUAUACGUCAUUAGCAUCCAAGUCUCCCAGCUCCUUAUCCAUACUAUAUAUGUACUAUAUAUGUAGCUGACA_ ....(((...(((((.((((........(((((........)))))..........))))..)))))...........((((((((((...))))))))))..))).. (-12.80 = -14.42 + 1.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:40 2006