Locus 9599

Sequence ID 3R_DroMel_CAF1
Location 25,354,500 – 25,354,598
Length 98
Max. P 0.958081
window15346

overview

Window 6

Location 25,354,500 – 25,354,598
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.39
Mean single sequence MFE -33.12
Consensus MFE -24.28
Energy contribution -24.70
Covariance contribution 0.42
Combinations/Pair 1.20
Mean z-score -1.92
Structure conservation index 0.73
SVM decision value 1.49
SVM RNA-class probability 0.958081
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25354500 98 + 27905053
GCAGUG-----CAGC--GG---CCGAGAGCAACUUGGCAUGUGUAAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUUGCAACUCC
....((-----((..--((---(((........((((((.((((((((((..(((((......)).)))..))..)))))))).....)))))))))))))))..... ( -32.00)
>DroVir_CAF1 44391 92 + 1
UU------------G--GGCCAGCUCGGGCAAGA-UGUAUAUGUGAGUGUUGAGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUCUUAC-UGC
..------------(--(((((.....(((((..-..((..((..(((((..(((((......)).)))..))..)))..))..)).)))))..))))))....-... ( -30.50)
>DroPse_CAF1 42903 100 + 1
GGACUC-----GGACUGGG---GCUGGGGCACUUUGGCAUGUGUAAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUUGCAACUCC
......-----.....(((---(.((((((...((((((.((((((((((..(((((......)).)))..))..)))))))).....))))))..)))).)).)))) ( -33.60)
>DroYak_CAF1 42770 98 + 1
UCAGUG-----CGCA--GA---CUGCGAGCACCUUGGCAUGUGUAAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUUGCAACUCC
......-----....--..---.(((((((.(.((((((.((((((((((..(((((......)).)))..))..)))))))).....)))))).))))))))..... ( -35.70)
>DroMoj_CAF1 43581 99 + 1
ACAGUA-----AAGC--GUCCAGCUGGAGCAAUA-CGUAUGUGUGAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUAGCUGUUAC-GUC
......-----..((--((.((((((..(((((.-.....(((..(((((..(((((......)).)))..))..)))..)))...)))))...))))))..))-)). ( -30.60)
>DroAna_CAF1 45939 103 + 1
CAAGUGUCCUUCGAA--GA---CCGCGAGCACCUUGGCAUGUGUAAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUUGCAACUCC
...(.(((.......--))---))((((((.(.((((((.((((((((((..(((((......)).)))..))..)))))))).....)))))).)))))))...... ( -36.30)
>consensus
GCAGUG_____CGAC__GG___CCGCGAGCAACUUGGCAUGUGUAAGUGUUGGGCAUGUACAAAUCGCUUGAUUGGCUUGCACUUAAUUGCCAAUGGCUUGCAACUCC
..........................((((...((((((.((((((((((..(((((......)).)))..))..)))))))).....))))))..))))........ (-24.28 = -24.70 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:59 2006