| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,352,559 – 25,352,658 |
| Length | 99 |
| Max. P | 0.517158 |
| Location | 25,352,559 – 25,352,658 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 82.31 |
| Mean single sequence MFE | -28.08 |
| Consensus MFE | -17.50 |
| Energy contribution | -17.67 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.517158 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25352559 99 + 27905053 ---GGUGACUGGGCAGAAAAAUGGUGGCC---AACGCU-----A-AUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCCCGCA----GAAAUGGCAG ---(....).(((((......(((((...---..))))-----)-.......((((((((.((((((.........)))))).)))))))).))))).(((----....).)).. ( -25.90) >DroPse_CAF1 40244 106 + 1 ---GGUGACUGGUCA--AAAAUGGUGGCC---AACGCCACGCUAAAUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCGGGAAAAGCG-AACGGGCG ---((((..((((((--.......)))))---).)))).((((....)))).((((((((.((((((.........)))))).))))))))..(((.(........-..).))). ( -32.30) >DroSec_CAF1 37362 99 + 1 ---GGUGACUGGGCAGAAAAAUGGUGGCC---AACGCU-----A-AUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCCCGCA----GAAAUGGCAG ---(....).(((((......(((((...---..))))-----)-.......((((((((.((((((.........)))))).)))))))).))))).(((----....).)).. ( -25.90) >DroWil_CAF1 40886 94 + 1 GGUGGUGACUGGACA--AAAAUGGUGGGCCUUAACGCU-----A-AUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCGGACA----C--------- ....(((.((((.((--....(((((........))))-----)-.......((((((((.((((((.........)))))).)))))))).)))))).))----)--------- ( -22.80) >DroAna_CAF1 43685 104 + 1 ---GGUGACUGGCCAAAAAAAUGGUGGCC---AAAGCU-----AAAUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCGUGAACUGAAAAAUGGCAA ---(....)((((((.........)))))---)..(((-----....)))..((((((((.((((((.........)))))).)))))))).((((((..........)))))). ( -29.30) >DroPer_CAF1 39842 106 + 1 ---GGUGACUGGUCA--AAAAUGGUGGCC---AACGCCACGCUAAAUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCGGGAAAAGCG-AACGGGCG ---((((..((((((--.......)))))---).)))).((((....)))).((((((((.((((((.........)))))).))))))))..(((.(........-..).))). ( -32.30) >consensus ___GGUGACUGGGCA__AAAAUGGUGGCC___AACGCU_____A_AUAGCGAUCGAAUUUAUGGAAUUAUUUCAUUGUUCUAGGAAUUUGAAUGCCGGGAA____G_AAUGGCAG ...(((.((((..........)))).)))...................(((.((((((((.((((((.........)))))).)))))))).))).................... (-17.50 = -17.67 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:58 2006