Locus 9596

Sequence ID	3R_DroMel_CAF1
Location	25,346,803 – 25,346,896
Length	93
Max. P	0.654747

overview

Window 2

Location	25,346,803 – 25,346,896
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.66
Mean single sequence MFE	-18.16
Consensus MFE	-15.16
Energy contribution	-15.08
Covariance contribution	-0.08
Combinations/Pair	1.18
Mean z-score	-1.37
Structure conservation index	0.83
SVM decision value	0.25
SVM RNA-class probability	0.654747
Prediction	RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25346803 93 - 27905053
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGUAUCUAUCGCAUCAAGGCAUCGCUGCGCACUCACUCGCUCACUGAAAGCACACGGAGAU
...................((((((((((....))))))...((....(((((....)))((........))...))....))..)))).... ( -19.20)
>DroSec_CAF1 31664 93 - 1
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGUAUCUAUCGCAUCAAGGCAUCGCUGCGCACUCACUCGCUCACUGAAAACACACAGAGAU
.....................((((((((....)))))))).((......)).(((.((.((........)).)).))).............. ( -16.20)
>DroSim_CAF1 32091 92 - 1
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGUAUCUAUCGCAUCAAGGCAUCGCUGCGCACUCGCUCGCUCACUGAAAACACACAGAGA-
.....................((((((((....)))))))).((......))...((.(((....)))..))...(((........)))...- ( -17.30)
>DroEre_CAF1 32293 90 - 1
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGCAUCUAUCGC---AAGGCAACGCUGCGCACUCACUCGCUCACUGAAGACACGCCGAGAU
.....................((((((.(....).))))))(((---(.(....)..))))......(((((((......))...).)))).. ( -15.30)
>DroYak_CAF1 34784 90 - 1
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGUGCCUAUCGC---AAGGCAUCGCUGCGCACUCACUCGCUCACCGAAAGCACACCGAGAU
.....................((((((((....)))))))).((---..(((...)))..)).....((((.....(....).....)))).. ( -22.80)
>consensus
CAAUUAUACAAAACAAAACCCGUAGGUACGAAAGUAUCUAUCGCAUCAAGGCAUCGCUGCGCACUCACUCGCUCACUGAAAACACACAGAGAU
.....................((((((((....)))))))).((......)).(((.((.((........)).)).))).............. (-15.16 = -15.08 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:56 2006