| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,338,070 – 25,338,199 |
| Length | 129 |
| Max. P | 0.990464 |
| Location | 25,338,070 – 25,338,175 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 76.64 |
| Mean single sequence MFE | -24.08 |
| Consensus MFE | -14.24 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.38 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925849 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25338070 105 + 27905053 CUAAUGGCCCU-CCCCCUCCCUUCAGAUGCUCCAAUCU--CCUUCCUUGCCAGCGAUGGCAUUUCAGUUGCUUUCUAGCUAAAUGGCAUAAUAACCACAAAACCCAUU ..(((((....-............((((......))))--.......(((((((((.((((.......)))).))..))....)))))...............))))) ( -15.90) >DroSec_CAF1 23059 95 + 1 CUAAUGGCCCUUCCUCCUCCCUUCAGCUGCUCCAAUCU--CCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUACCCA----------- .........................((..(........--.......(((((....)))))..(((((((.....))))))))..))..........----------- ( -21.40) >DroSim_CAF1 23448 97 + 1 CUAAUGGCCCUUCCUCCUCCCUUCAGCUGCUCCAAUCU--CCUUUCUUGCCAACGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUAACUAC---------U .........................((..(........--.......(((((....)))))..(((((((.....))))))))..))...........---------. ( -20.60) >DroEre_CAF1 23233 99 + 1 CUAAUGGCGCU-------CCCUUCAGCUGCUCCAAGCU--CCUUCCUUGCUGGUGGUGGCACUUCAGCUGCUUUGUAGCUGAAAGAUGUAAUAUCCAUGAGAUAUAUG ((.((((.((.-------.((.(((((.((.....)).--........))))).))..))..(((((((((...)))))))))...........)))).))....... ( -28.80) >DroYak_CAF1 24849 104 + 1 CUAAUGGCCCU----CCUCCCGUCAGCUGCUCCAAUCUGUGCUUCCUUGUGGGUGAUGGCCUUUCAGCUGCUUUGUAGCUGAAUGGUAUAGUAUCUAUGAGAUACAUA .....((((.(----(..((((..((..((.(......).))...))..)))).)).)))).(((((((((...))))))))).......(((((.....)))))... ( -33.70) >consensus CUAAUGGCCCU_CC_CCUCCCUUCAGCUGCUCCAAUCU__CCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAAUGGCAUAAUAACCAC_A_A___AUU ......(((......................................(((((....))))).((((((((.....)))))))).)))..................... (-14.24 = -14.08 + -0.16)
| Location | 25,338,101 – 25,338,199 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 67.94 |
| Mean single sequence MFE | -20.33 |
| Consensus MFE | -14.18 |
| Energy contribution | -13.42 |
| Covariance contribution | -0.75 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.70 |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.990464 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25338101 98 + 27905053 CAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGUUGCUUUCUAGCUAAAUGGCAUAAUAACCACAAAACCCAUUUAACCUUCAUGAAGUGUUGUGUAU ..................((.(..((((((((...(((....)))(((((((.................))))))).......))))))))..))).. ( -17.33) >DroSec_CAF1 23091 79 + 1 CAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUACCCA-----------UA--------AACCUAUUAUAUGU .............(((((....)))))..(((((((.....)))))))((((........)))-----------).--------.............. ( -17.30) >DroSim_CAF1 23480 89 + 1 CAAUCUCCUUUCUUGCCAACGAUGGCAUUUCAGCUGCUUUCUAGCUGAGUGGCAUAAUAACUAC---------UUAGUCUUCUUGAAGUAUUAUGUAU .............(((((....))))).((((((((.....))))))))..((((((((.((.(---------..((....)).).)))))))))).. ( -20.80) >DroEre_CAF1 23258 94 + 1 CAAGCUCCUUCCUUGCUGGUGGUGGCACUUCAGCUGCUUUGUAGCUGAAAGAUGUAAUAUCCAUGAGAUAUAUG----AUACACAAUAUGUGGGAUAU ...((..((.((.....)).))..))..(((((((((...))))))))).......((((((.....((((((.----.......)))))).)))))) ( -25.90) >consensus CAAUCUCCUUCCUUGCCAGCGAUGGCAUUUCAGCUGCUUUCUAGCUGAAUGGCAUAAUAACCAC_________UUA__CUUCAUAAAGUAUUAUAUAU .............(((((....))))).((((((((.....))))))))..((((((((.............................)))))))).. (-14.18 = -13.42 + -0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:45 2006