Locus 959

Sequence ID 3R_DroMel_CAF1
Location 3,140,533 – 3,140,627
Length 94
Max. P 0.794227
window1536

overview

Window 6

Location 3,140,533 – 3,140,627
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 98.94
Mean single sequence MFE -40.30
Consensus MFE -36.42
Energy contribution -36.43
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.51
Structure conservation index 0.90
SVM decision value 0.60
SVM RNA-class probability 0.794227
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 3140533 94 + 27905053
UAAUUGUGCAGGUGACAACGCGAGUGGCACGCGCUGCUGACGCUGAUUAGAGGCAGUUGCACCUGCAGCUGCACUCGCCGCUGUGGCAGAUACU
....(.(((.(....)..(((.((((((..((((....).)))......(((((((((((....)))))))).))))))))))))))).).... ( -40.70)
>DroSec_CAF1 16357 94 + 1
UAAUUGUGCAGGUGACAACGCGAGUGGCACGCGCUGCUGUCGCUGAUUAGAGGCAGUUGCACCUGCAGCUGCACUCGCCGCUGUGGCAGAUACU
....(.(((.(....)..(((.((((((..((((....).)))......(((((((((((....)))))))).))))))))))))))).).... ( -40.70)
>DroSim_CAF1 17584 94 + 1
UAAUUGUGCAGGUGACAACGCGAGUGGCACGCGCUGCUGACGCUGAUUAGAGGCAGUUGCACCUGCAGCUGCACUCGCCGCUGUGGCAGAUACU
....(.(((.(....)..(((.((((((..((((....).)))......(((((((((((....)))))))).))))))))))))))).).... ( -40.70)
>DroEre_CAF1 18034 94 + 1
UAAUUGUGCAGGUGACAACGCGAGUGGCACGCGCUGCUGACGCUGAUUAGAGGCAGUUGCACCUGCAGCUGCACUCGCCGCUGUGCCAGAUACU
...(((((..(....)..))))).((((((((((.((....))......(((((((((((....)))))))).)))).))).))))))...... ( -39.10)
>consensus
UAAUUGUGCAGGUGACAACGCGAGUGGCACGCGCUGCUGACGCUGAUUAGAGGCAGUUGCACCUGCAGCUGCACUCGCCGCUGUGGCAGAUACU
..........((((.(..(((.((((((..((((....).)))......(((((((((((....)))))))).))))))))))))...).)))) (-36.42 = -36.43 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:39 2006