| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,333,372 – 25,333,469 |
| Length | 97 |
| Max. P | 0.817823 |
| Location | 25,333,372 – 25,333,469 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 84.95 |
| Mean single sequence MFE | -29.23 |
| Consensus MFE | -26.54 |
| Energy contribution | -26.27 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.817823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25333372 97 + 27905053 GCUGCGCCUGCUCCAAGUAAUGGGCUGCCGUUAAAGGUGGCGACCGGGAGCCGCCUAUUCCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUGC ((.((.((((..(((.....)))((..((......))..))...)))).)).))............((((((((.........))))))))...... ( -30.50) >DroPse_CAF1 20404 86 + 1 -----------CGAAAAUAAUGGGGAGCCGUUAAAGGUGGCGACCGGGAGCCGCCUAGCCCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUGC -----------((....((((((....)))))).(((((((........)))))))....))....((((((((.........))))))))...... ( -28.80) >DroSec_CAF1 18277 97 + 1 GCUGCGCCUGCUGCAAGUAAUGGGUUGCCGUUAAAGGUGGCGACCGGGAGCCGCCUAUACCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUGC ((.((....)).))..((((((((((((.((((.(((((((........))))))).....(((((....)))))...)))).)))))).).))))) ( -31.40) >DroSim_CAF1 18751 97 + 1 GCUGCGCCUGCUGCAAGUAAUGGGCUGCCGUUAAAGGUGGCGACCGGGAGCCGCCUAUCCCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUGC ((.((....)).))..(((((..((..((......))..))...(((((........)))))....((((((((.........)))))))).))))) ( -31.90) >DroWil_CAF1 17990 86 + 1 -----------GAAAAAUAAUGGUAAGUCGUUAAAGGUGGCGACCAGGAGCCGCCUAUCCGGACAAGUGAUUGUUUUAUAAUUGCAAUUGCAAUUGC -----------..((((((((.(...(((.....(((((((........))))))).....)))...).)))))))).(((((((....))))))). ( -25.20) >DroAna_CAF1 24470 83 + 1 -------------GAAAUAAUGGGCAGCCGUUAAAGGUGGCGACCAGGAGCCGCCUAGCCCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUG- -------------.......(((((.........(((((((........))))))).)))))....((((((((.........)))))))).....- ( -27.60) >consensus ___________UGCAAAUAAUGGGCAGCCGUUAAAGGUGGCGACCGGGAGCCGCCUAUCCCGACAAGUGAUUGUUUUAUAAUUGCAAUCGCAAUUGC .................((((((....)))))).(((((((........)))))))..........((((((((.........))))))))...... (-26.54 = -26.27 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:42 2006