Locus 9587

Sequence ID 3R_DroMel_CAF1
Location 25,329,573 – 25,329,665
Length 92
Max. P 0.517286
window15324

overview

Window 4

Location 25,329,573 – 25,329,665
Length 92
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 70.87
Mean single sequence MFE -16.04
Consensus MFE -3.56
Energy contribution -4.40
Covariance contribution 0.84
Combinations/Pair 1.10
Mean z-score -1.65
Structure conservation index 0.22
SVM decision value -0.03
SVM RNA-class probability 0.517286
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25329573 92 + 27905053
UCAGUUAUUGUUGAAACAUUUAACUGCAUUUACUAUUUAGUUUCUAA---UAGUUACAGUUUUACAUUCACUCAAUAUACAGCCUAGGCUGGUGU
.....(((((.((((......(((((.....((((((........))---))))..))))).....))))..)))))..((((....)))).... ( -18.30)
>DroSec_CAF1 14555 95 + 1
UUAGUUAUUGUUAAAACUUUUAACUACAUUUACUUUUUAGUUUCUAACGAUAAUUACAGUUUUACAUUUACUCAAUGUAAAGCCUUCGCUGGCGU
.(((((((((((((((((....................))))).))))))))))))....((((((((.....))))))))(((......))).. ( -20.25)
>DroSim_CAF1 14530 95 + 1
UUAGUUAUUUUUAAAACUUUUAACUACAUUUACUUUUUAGUUUCUAACGAUAAUUACAGUUUUACAUUUACUCAAUGUAAAGCCUACGCUGGCGU
.((((((((.((((((((....................))))).))).))))))))....((((((((.....))))))))(((......))).. ( -14.95)
>DroEre_CAF1 14749 88 + 1
ACAUGUAUUAAUCAAAUUUUAAGC------UACUUUU-AGUUGUUAACGAAACAUGCAGUUUUAGAUGCACUGAAUGUAAAGCUAACAGAGCUGC
.....................(((------(.((.((-((((....(((...((((((........)))).))..)))..)))))).)))))).. ( -14.30)
>DroYak_CAF1 15473 82 + 1
AUAUGUAU-------AUUUAAAGC------UACUUUUCAGUUUUUAAAGAAAACUACAGUUUGACAUUCACCAAAUGUAAAGUCUAAGCUGGCGU
........-------.......((------........(((((((...))))))).(((((((((.((((.....)).)).))).)))))))).. ( -12.40)
>consensus
UUAGUUAUUGUUAAAACUUUUAACU_CAUUUACUUUUUAGUUUCUAACGAUAAUUACAGUUUUACAUUCACUCAAUGUAAAGCCUACGCUGGCGU
..........................................................((((((((((.....))))))))))............ ( -3.56 =  -4.40 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:41 2006