Locus 9585

Sequence ID 3R_DroMel_CAF1
Location 25,320,462 – 25,320,552
Length 90
Max. P 0.662867
window15321

overview

Window 1

Location 25,320,462 – 25,320,552
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 81.28
Mean single sequence MFE -26.27
Consensus MFE -18.81
Energy contribution -19.84
Covariance contribution 1.03
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.662867
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25320462 90 - 27905053
UGGGCGAAUGCUCCGCGUUCUCGACGGCUCCACAACUCUGAGAAAACUGAGAAAA-UCAGGCGUCCGCGGAAAAUGGUUUAUGCCAAAAUU
..((((...((((((((.....((((.((.......(((.((....)).)))...-..)).)))))))))).....))...))))...... ( -23.60)
>DroPse_CAF1 4937 91 - 1
UUGAGACUUGUUCCGCGUAGUGGACAGCUCCACAACUCUCUGGCAACUGAGAAAAUUCAGGCGUCCGCGGAAAAUGGUUUUUGCCAAAAUA
..((((((..(((((((..(((((....)))))...((((.(....).)))).............)))))))...)))))).......... ( -29.20)
>DroEre_CAF1 6029 82 - 1
--------UGUUCCGCGUUCUCGACGGCUCCACAACUCUGGGGAAACUGAGAAAA-UCAGGCGUCCGCGGAAAAUGGUUUAUGCCAAAAUC
--------..(((((((.....((((.((.......(((.((....)).)))...-..)).)))))))))))..((((....))))..... ( -27.90)
>DroMoj_CAF1 4050 87 - 1
CUCGAAUUUGUUCCGCGUAGCUGAGAGUUCUACAGCGCUCAUGCAACUGAGA----UCAGGCGUCCGCGAAAAAUGGUUUUUGCCAAAAUG
......(((((..(((...((((((....)).))))((....))..(((...----.))))))...)))))...((((....))))..... ( -20.90)
>DroAna_CAF1 11517 91 - 1
GGGCUAUUUGUUCCGCGUACUUGACUGCUCCACAACUCUCUGGCAACUGAGAAAACUCAGGCGUCCGCGGAAAAUGGUUUAUGCCAAAAUC
.(((.(((..(((((((.....(((.(((.......((((.(....).)))).......)))))))))))))...)))....)))...... ( -26.84)
>DroPer_CAF1 4906 91 - 1
UUGAGACUUGUUCCGCGUAGUGGACAGCUCCACAACUCUCUGGCAACUGAGAAAAUUCAGGCGUCCGCGGAAAAUGGUUUUUGCCAAAAUA
..((((((..(((((((..(((((....)))))...((((.(....).)))).............)))))))...)))))).......... ( -29.20)
>consensus
UUGAGACUUGUUCCGCGUACUCGACAGCUCCACAACUCUCUGGCAACUGAGAAAA_UCAGGCGUCCGCGGAAAAUGGUUUAUGCCAAAAUA
..........(((((((.....(((.(((.......((((.(....).)))).......)))))))))))))..((((....))))..... (-18.81 = -19.84 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:38 2006