| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,317,754 – 25,317,859 |
| Length | 105 |
| Max. P | 0.581317 |
| Location | 25,317,754 – 25,317,859 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 71.66 |
| Mean single sequence MFE | -29.82 |
| Consensus MFE | -15.93 |
| Energy contribution | -15.40 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.581317 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25317754 105 - 27905053 ---ACA--AAUGUGUAAUACUUAACUAAUUUAGGGCUGCCCGCCACCGUCAUCUCGACAAUAAUGGCCGUCUACCAACUGGUCUACUCGGCCGUGUUCACGGAUGGCUUC ---...--........................(((...)))(((((((((.....)))....(((((((...(((....))).....)))))))......)).))))... ( -28.80) >DroGri_CAF1 2908 107 - 1 CUUUGAUUAAAUUUC-ACACU--UCUUUCCUAGGGCUACCUGCCACAGUCAUAUCAGUGAUUAUGGCCAUCUAUCAGCUGAUCUAUGCUGCCAUUUUCACCGAUGGCUUU ...............-.....--..........(((.....)))..((((((....((((..((((((((..(((....)))..)))..)))))..))))..)))))).. ( -25.10) >DroSim_CAF1 2570 103 - 1 ---AUAUAU----AUAAUACCCAACUACCGUAGGGCUGCCCGCCACCGUCAUCUCGACGAUAAUGGCCGUGUACCAACUGGUCUACUCCGCCGUUUUUACGGACGGCUUC ---......----......(((.((....)).)))..(((..((..((((.....))))..((((((.(((.(((....))).)))...)))))).....))..)))... ( -27.30) >DroEre_CAF1 2781 107 - 1 ---GUUACCUUGUGCAAUGCUUGACUUCCGCAGGGCUGCCCGCCACCGUCAUCUCGACGAUAAUGGCCGUGUACCAGCUGGUCUACUCGGCCGUAUUCACGGACGGAUUC ---((..(((((((.((........)).)))))))..))(((((..((((.....))))...(((((((.(((((....)))..)).)))))))......)).))).... ( -36.60) >DroYak_CAF1 3277 107 - 1 ---GUUCCCAUGUGUAAUACUCGACUUUUGUAGGGCUGCCUGCCACCGUCAUCUCGGCGAUCAUGGCCGUGUACCAGCUGGUCUACUCGGCCAUAUUCACGGACGGAUUC ---..(((..((((.((((.(((......(((((....)))))..(((......))))))...((((((.(((((....)))..)).))))))))))))))...)))... ( -32.60) >DroMoj_CAF1 2359 106 - 1 --UUGAUUUAAUUGGUGUGCU-CUCUAU-CUAGGGCUACCUGCCACGGUUAUAUCGGUCAUUAUGGCCAUUUACCAGCUGAUCUAUGCUGCCGUUUUUACCGAUGGAUUC --...........((((.(((-((....-..)))))))))..(((((((.....(((((.....))))......((((........))))..).....)))).))).... ( -28.50) >consensus ___AUAUCAAUGUGUAAUACU_AACUAUCGUAGGGCUGCCCGCCACCGUCAUCUCGACGAUAAUGGCCGUGUACCAGCUGGUCUACUCGGCCGUUUUCACGGACGGAUUC .................................(((.....))).(((((........((..(((((.((..(((....)))..))...)))))..))...))))).... (-15.93 = -15.40 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:37 2006