| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,309,754 – 25,309,847 |
| Length | 93 |
| Max. P | 0.935476 |
| Location | 25,309,754 – 25,309,847 |
|---|---|
| Length | 93 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -40.83 |
| Consensus MFE | -26.95 |
| Energy contribution | -28.60 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935476 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25309754 93 - 27905053 GCGCCUGCACU------UGCAGUUGCUG---------GUGAUCCUGCAUUGGCGACUGUGGAUGAGAUCUGGUGGGACAGGUCGGAUGGCGAAUGCGAUGACAGUUGG .((((..((.(------..(((((((..---------(((......)))..)))))))..).)).((((((......))))))....))))....((((....)))). ( -37.20) >DroSec_CAF1 166459 108 - 1 GCACCUGCACUUGCACUUGCAGUUGCUGGCGUGACCGGUGAUGCUGCAUUGGCGACUGUGGAUGAGAUCUGGUGGGACAGGUCUGAUGGCGAAUGCGAUGGCAGUUGG .((.((((..(((((.(..(((((((((((((.(....).))))).....))))))))..)((.(((((((......))))))).))......)))))..)))).)). ( -41.50) >DroYak_CAF1 173109 102 - 1 GCAUUCGCACUUGCAGUUGCAGUGGCUGGCGUGGCUGGUGAUGCUGCAUGGGCGACUGUGGGUGAGAUCUGGUGGGUCAGGUCUGAUGGC------GAUGGCAGUUGG ((..(((((((..(((((((....((.(((((.(....).)))))))....)))))))..))).((((((((....))))))))....))------))..))...... ( -43.80) >consensus GCACCUGCACUUGCA_UUGCAGUUGCUGGCGUG_C_GGUGAUGCUGCAUUGGCGACUGUGGAUGAGAUCUGGUGGGACAGGUCUGAUGGCGAAUGCGAUGGCAGUUGG ((..(((((.((((...((((((.(((((.....)))))...))))))...)))).)))))((.(((((((......))))))).)).)).................. (-26.95 = -28.60 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:35 2006