Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,140,333 – 3,140,433 |
Length | 100 |
Max. P | 0.977152 |
Location | 3,140,333 – 3,140,433 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -34.51 |
Consensus MFE | -30.57 |
Energy contribution | -31.13 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.04 |
Mean z-score | -3.32 |
Structure conservation index | 0.89 |
SVM decision value | 1.79 |
SVM RNA-class probability | 0.977152 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3140333 100 - 27905053 GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCAUCGAGCGCAAGACCUACCUGGGCA (((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13) >DroSec_CAF1 16158 100 - 1 GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA (((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13) >DroSim_CAF1 17385 100 - 1 GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA (((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). ( -34.13) >DroEre_CAF1 17836 99 - 1 GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGUCGAAUUCGUUGACAGGUG-GGGCUUUUUCUUGGAGCACCAGACCUACCUGGCCA ((((.....((((((((..(((((((.................)))))))..))))))))((((-(((((((.....)))))......)))))))))).. ( -35.63) >consensus GCCAAUAAAUGUCAACGGUUUUGGCGCAUUAACAUAACAGCUACGCCGAAUUCGUUGACAGGUUACUGCUUUUUCUUCGAGCGCAAGACCUACCUGGGCA (((.......(((((((..(((((((.................)))))))..)))))))(((((..(((((.......)))))...))))).....))). (-30.57 = -31.13 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:38 2006