| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,303,096 – 25,303,190 |
| Length | 94 |
| Max. P | 0.647193 |
| Location | 25,303,096 – 25,303,190 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.25 |
| Mean single sequence MFE | -20.19 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.72 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.93 |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.647193 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25303096 94 - 27905053 UCCAGCUCCUCACGCUGUUUUGCGUUCUACUCUGCUCUACCCGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGGCAACCC ..((((.......))))(((((((...((((((((.......))))))))..)))))))...........(((((......)))))(....).. ( -22.00) >DroSec_CAF1 159972 89 - 1 UCCAGCUCCUCACGCUGUUUUGCGUUCUGCUCUGCU-----CGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGGCAACCC ..((((.......))))(((((((...(((((((..-----..)))))))..)))))))...........(((((......)))))(....).. ( -19.90) >DroSim_CAF1 160841 89 - 1 UCCAGCUCCUCACGCUGUUUUGCGUUCUGCUCUGCU-----CGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGGCAACCC ..((((.......))))(((((((...(((((((..-----..)))))))..)))))))...........(((((......)))))(....).. ( -19.90) >DroEre_CAF1 179804 89 - 1 UCCAGCUCCUCACGCUGUUUUGCGUUCUGCUCUGCU-----CGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGGGAACCC ..((((.......))))(((((((...(((((((..-----..)))))))..)))))))...........(((((......)))))((....)) ( -20.40) >DroYak_CAF1 166416 89 - 1 UCCAGCUCCUCACGCUGUUUUGCGUUCUGCUCUGCU-----CGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUGGGGAACCC ((((((.......(((((((((.....(((((((..-----..)))))))(((((.....))))))))))))))........))))))...... ( -21.36) >DroAna_CAF1 155131 89 - 1 CUCGGUUUCUCACGCUGUUAUGCUCGCUGCUUUGCU-----UCGAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGAGAACUC ...((((.(((..((...(((.((((..((...)).-----.)))).)))...))...............(((((......)))))))))))). ( -17.60) >consensus UCCAGCUCCUCACGCUGUUUUGCGUUCUGCUCUGCU_____CGCAGGGUAUUUGUAAAAAAUAAAUAAAAUGGCAUUAAUUUGUUAGGCAACCC ..((((.......))))(((((((...((((((((.......))))))))..)))))))...........(((((......)))))........ (-18.74 = -18.72 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:31 2006