| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,301,975 – 25,302,089 |
| Length | 114 |
| Max. P | 0.616419 |
| Location | 25,301,975 – 25,302,089 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Mean single sequence MFE | -36.92 |
| Consensus MFE | -26.62 |
| Energy contribution | -25.57 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25301975 114 - 27905053 CCGAAGCAGCUGAAGAUGAUGCCCACCAGAACGGCCAGGUUGUAGUCAUUAUGCGACUGCCGCAGCAGCGGUUGCAAUUUCUCGCAGUUCGGUUGCAGUUGUAUCUGUUGAUA---G--- .....(((((((((((((((..(.(((..........))).)..)))))).(((((((((.......)))))))))...........))))))))).....((((....))))---.--- ( -35.20) >DroVir_CAF1 383591 111 - 1 CCAAAGCAGCUGAAUAUGAUGCCCACCAAUACGGCCAGGUUGUAAUCGUUGUGCGAUUGCCGCAGCAGCGGCUGCAGCUUCUCGCAAUUCGGCUGCAAUUGUAUCUGAAA------G--- .....((((((((((.((..(((.........))).((((((((..(((((((((.....)))).)))))..))))))))....))))))))))))..............------.--- ( -40.60) >DroGri_CAF1 302350 111 - 1 CCAAAGCAGCUGAAGAUGAUGCCAACCAAUACGGCCAAGUUGUAGUCGUUAUGCGAUUGACGCAGCAACGGUUGCAACUUCUCACAGUUCGGCUGCAACUGUAUCUGAAA------U--- .....(((((((((..((..(((.........))).((((((((..((((.((((.....))))..))))..))))))))....)).)))))))))..............------.--- ( -39.60) >DroWil_CAF1 248153 120 - 1 CCAAAGCAGCUGAAGAUGAUGCCCACCAGGACGGCCAGAUUGUAAUCGUUAUGCGAUUGACGUAGUAAAGGUUGCAGCUUCUCGCAGUUCGGUUGUAGUUGAAUCUAAAUCGAGGUGGGA .....................((((((.((((.((.(((((((((((....((((.....)))).....))))))))..))).)).))))((((.(((......)))))))..)))))). ( -34.70) >DroMoj_CAF1 210169 111 - 1 CCGAAGCAGCUGAAAAUGAUGCCCACCAGGACGGCCAAGUUGUAGUCGUUGUGCGAUUGCCUCAACAGUGGCUGCAGCUUCUCGCAGUUCGGCUGCAAUUGUAUCUGAAA------G--- .....(((((((((.....(((......((....))((((((((((((((((..((.....)).))))))))))))))))...))).)))))))))..............------.--- ( -37.80) >DroAna_CAF1 153984 117 - 1 CCGAAACAGCUGAAGAUUAUGCCCACUAAGACGGCCAGGUUGUAGUCAUUAUGCGACUGCCGCAGCAGAGGUUGAAGUUUCUCGCAAUUUGGUUGCAGUUGUAUCUGUUAAGGGGCG--- ....................((((.((..((((((..(((((((.......))))))))))(((((.((((........))))(((((...))))).)))))....))).)))))).--- ( -33.60) >consensus CCAAAGCAGCUGAAGAUGAUGCCCACCAAGACGGCCAGGUUGUAGUCGUUAUGCGAUUGCCGCAGCAGCGGUUGCAGCUUCUCGCAGUUCGGCUGCAAUUGUAUCUGAAA______G___ .....(((((((((.....(((.........(((((..((((((((((.....))))))...))))...))))).........))).)))))))))........................ (-26.62 = -25.57 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:30 2006