| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,298,539 – 25,298,637 |
| Length | 98 |
| Max. P | 0.784213 |
| Location | 25,298,539 – 25,298,637 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 71.35 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -21.16 |
| Energy contribution | -20.76 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.01 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784213 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25298539 98 - 27905053 AGCCGCCUUAAAUUGAGCGGUGGGCAUCUUUUCGCUGCUCAUUAUUAUGAGAUGCGUCGCCGCAUGUCACUGGUUGCAGGAGAAGGGAAUGGAAUGGA---- .((.(((......(((((((((((......)))))))))))......(((.(((((....))))).)))..))).)).....................---- ( -30.70) >DroSim_CAF1 155601 89 - 1 ----ACCUUAAAUUGAGCGGUGGGCAUCUUUUCGCUGCUCAUUAUUAUGAGAUGCGUCGCCGCAUGUCACUGGUUGCUGGGGAAGUGAAGGGA--------- ----.((((....(((((((((((......)))))))))))......(((.(((((....))))).)))....(..((.....))..))))).--------- ( -29.50) >DroEre_CAF1 175037 94 - 1 ----ACCUUAAAUUGAGCGGCGGGCAUCUUUUUGCUGCUCAU---UAUGAGAUGCGUCGCCGCAUGUCACUGGAUGCGGGGUAAG-GAGGGGAAGGGAGGGG ----.((((.......((.....)).((((((((((.(.(((---(.(((.(((((....))))).)))...)))).).))))))-))))......)))).. ( -30.70) >DroYak_CAF1 161647 87 - 1 ----ACCUUAAAUUGAGCGGUGGCCAUCUUUUCGCUGCUCAU---UAUGAGAUGCGUCGCCGCAUGUCACUGGAUGCGGGGGAAG----GGGAAG----GGA ----.((((....((.((....))))(((((((.((((((..---..(((.(((((....))))).)))...)).)))).)))))----)).)))----).. ( -30.20) >DroAna_CAF1 150956 85 - 1 ----UUUCGAAAUUGAACACUGGCCGGGCUUUCGGUGUUCAU---UAUGAGCAAUGUCACCGCAUGUGACAGGAGCCAG-AAACCAGGACGCA--------- ----...............((((...((((((...(((((..---...))))).((((((.....))))))))))))..-...))))......--------- ( -24.10) >consensus ____ACCUUAAAUUGAGCGGUGGGCAUCUUUUCGCUGCUCAU___UAUGAGAUGCGUCGCCGCAUGUCACUGGAUGCAGGGGAAG_GAAGGGAA________ .....((......(((((((((((......)))))))))))......(((.(((((....))))).)))..))............................. (-21.16 = -20.76 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:29 2006