| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,286,842 – 25,286,932 |
| Length | 90 |
| Max. P | 0.899479 |
| Location | 25,286,842 – 25,286,932 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.98 |
| Mean single sequence MFE | -29.22 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.60 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.23 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.63 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899479 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25286842 90 + 27905053 CACUGGCUCAUCUUAACCCACAGCUGGCGCACACAUGUCGUCGCAAAGUCGUUUGUGGGCAUUGCCAAUUUGUUGUCAGACU--CUUCGAAU--- ..(((((.((......(((((((.((((((((.......)).))...)))).)))))))...........))..)))))...--........--- ( -18.73) >DroPse_CAF1 150354 90 + 1 CC--AUCCCAUUCCAGGCUGCAGCUGGCGCACACAUGUCGUCGGCCAGCCGUUUGUGGGCAUUGCCAAUUUGUUGGCGAGCUCUCUUCAUAU--- ..--...((((....(((((..(((((((.((....))))))))))))))....))))((.(((((((....)))))))))...........--- ( -35.90) >DroEre_CAF1 161175 90 + 1 CACUGGAUCAUCUUAACCCACAGCUGGCGCACACAUGUCGUCAGAAAGUCGUUUGUGGGCAUUGCCAAUUUGUUGGCAGCCU--CUUCAGAU--- ..(((((.........(((((((((((((.((....))))))))........)))))))..(((((((....)))))))...--.)))))..--- ( -28.80) >DroYak_CAF1 149364 90 + 1 CACUGGAUCAUCUUAACCCACAGCUGGCGCACACAUGUCGUCAGAAAGUCAUUUGUGGGCAUUGCCAAUUUGUUGGCAGCCU--CUUCAGAU--- ..(((((.........(((((((((((((.((....))))))))........)))))))..(((((((....)))))))...--.)))))..--- ( -28.80) >DroAna_CAF1 139260 87 + 1 ------AUAAUCCGAGCCCACAGAUGGCGCACACAUGUCGUCGGCAAGUCGUUUGGGGGGUUUGCCAAUUUGUUGGCCAACU--CUUCAUAUAAU ------......((((((....(((((((......))))))))))...)))..(((((((((.(((((....))))).))))--)))))...... ( -27.20) >DroPer_CAF1 152049 88 + 1 ----AUCCCAUUCCAGGCUGCAGCUGGCGCACACAUGUCGUCGGCCAGCCGUUUGUGGGCAUUGCCAAUUUGUUGGCGAGCUCUCUUCAUAU--- ----...((((....(((((..(((((((.((....))))))))))))))....))))((.(((((((....)))))))))...........--- ( -35.90) >consensus CA__GGAUCAUCCUAACCCACAGCUGGCGCACACAUGUCGUCGGAAAGUCGUUUGUGGGCAUUGCCAAUUUGUUGGCAAACU__CUUCAUAU___ ................(((((((((((((.((....))))))))........)))))))..(((((((....)))))))................ (-18.46 = -18.60 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:25 2006