Locus 9571

Sequence ID 3R_DroMel_CAF1
Location 25,283,043 – 25,283,147
Length 104
Max. P 0.570277
window15305

overview

Window 5

Location 25,283,043 – 25,283,147
Length 104
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 78.44
Mean single sequence MFE -27.16
Consensus MFE -15.91
Energy contribution -15.94
Covariance contribution 0.03
Combinations/Pair 1.25
Mean z-score -1.57
Structure conservation index 0.59
SVM decision value 0.07
SVM RNA-class probability 0.570277
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25283043 104 - 27905053
UUUAAUGUGUGCACCU---CGAACUCGC-CACUUUUUGAUCCCAGCGAGUAGGGGGAAAUU-CGACCUUAUUUCAGAAUUUUAAAUUCCCACGCCUUUGGCGCGCAAUU
.....(((((((.(((---(..((((((-...............)))))).))))((((((-(............))))))).................)))))))... ( -28.06)
>DroSec_CAF1 139974 103 - 1
UUUAAUG-GUGUGCCU---CGAACUCGC-CACUUUUUGGUACCAGCGAGUAGGGGGAAAUU-CGACCUUUCUUCAGAAUUUUAAAUUCCCACGCCUUUGGCGCGCAAUU
.......-(((((((.---...((((((-.(((....)))....)))))).((((((((((-(............)))))))....))))........))))))).... ( -29.70)
>DroSim_CAF1 139704 103 - 1
UUUAAUG-AUGUGCCU---CGAACUCGC-CAGUUUUUGAUACCAGCGAGUAGGGGGAAAUU-CGACCUUACUUCAGAAUUUUAAAUUCCCAGGGCUUUGGCGCGCAAUU
.....((-.((((((.---...((((((-..((.......))..)))))).((((((((((-(............)))))))....))))........))))))))... ( -27.40)
>DroEre_CAF1 157303 102 - 1
UUCAAUG--UGUGUCU---UGAACUCGC-CACUUUUUGAUCCCAGCGAGUAGGGGGAAAUU-CGACUUUGCAUGAACGUUUUAAAUUCCCACGACUUUGGCGCGAAAUU
.......--((((((.---.(((.((((-(((((.(((....))).)))).))(((((...-.((((((....))).))).....))))).))).)))))))))..... ( -20.10)
>DroYak_CAF1 145357 102 - 1
UUUAAUG--UGUGUCU---UGAACUCGC-CACUUUUUGAUCCCAGCGAGUAGGGGGAAAUU-CGACCUUACAUCAACAUUUAAAAUUCCCUCGCCUUUGGCGCGCAAUU
.....((--((((((.---...((((((-...............)))))).(((((((.((-..(..............)..)).)))))))......))))))))... ( -26.60)
>DroAna_CAF1 135244 89 - 1
------G--UGUGCUAUGAGGAACUCGCUCAAUUUUAGAGUCUAGCGAGUG--GGGAAAUUUUCAUUUUA--UGGGAAUUU-------CUA-GAAAUUGGCGCGCAAUU
------(--(((((((......(((((((..(((....)))..))))))).--.(((((((..(((...)--))..)))))-------)).-.....)))))))).... ( -31.10)
>consensus
UUUAAUG__UGUGCCU___CGAACUCGC_CACUUUUUGAUCCCAGCGAGUAGGGGGAAAUU_CGACCUUACUUCAGAAUUUUAAAUUCCCACGCCUUUGGCGCGCAAUU
..........(((((.......((((((................))))))...(((((...........................)))))........)))))...... (-15.91 = -15.94 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:24 2006