Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,138,658 – 3,138,757 |
Length | 99 |
Max. P | 0.611363 |
Location | 3,138,658 – 3,138,757 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 89.89 |
Mean single sequence MFE | -38.55 |
Consensus MFE | -30.77 |
Energy contribution | -33.52 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.80 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.611363 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3138658 99 + 27905053 AUGCUUGGUCAUGGACGCCAAAUGGUUGACAGACUCUCCCGACAGCUGCAAUGGCGCAGGGGCAGGGUUUGCAUGUGGCUUAUGGCCAGGCUUUG--------GGCC ..((((((((((((..((((......((.(((((((((((.....((((......))))))).))))))))))..))))))))))))))))....--------.... ( -41.50) >DroSec_CAF1 14542 94 + 1 AUGCUUGGUCAUGGACGCCAAAUGGUUGACAGACUCUCCCGACAGCUGCAAUGGCGCAGGGGCAGGGUUUGCAUGUGGCUUAUGG-----CUGAG--------GGCU ...((..(((((((..((((......((.(((((((((((.....((((......))))))).))))))))))..))))))))))-----)..))--------.... ( -35.90) >DroSim_CAF1 15321 94 + 1 AUGCUUGGUCAUGGACGCCAAAUGGUUGACAGACUCUCCCGACAGCUGCAAUGGCGCAGGGGCAGGGUUUGCAUGUGGCUUAUGG-----CUGAG--------GGCU ...((..(((((((..((((......((.(((((((((((.....((((......))))))).))))))))))..))))))))))-----)..))--------.... ( -35.90) >DroEre_CAF1 16070 106 + 1 AUGCUUGGUCAUGGACGCCAAAUGGUUGACAGACUCUCCCGACAGCUGCAAUGGCGCAGGGGCAGGGUUUGCAUGUGG-UUAUGGCCAGGCUCUGGUCUUCUGGUCU ..(((((((((((...((((......((.(((((((((((.....((((......))))))).))))))))))..)))-))))))))))))...(..(....)..). ( -40.90) >consensus AUGCUUGGUCAUGGACGCCAAAUGGUUGACAGACUCUCCCGACAGCUGCAAUGGCGCAGGGGCAGGGUUUGCAUGUGGCUUAUGG_____CUGAG________GGCU ..((((((((((((..((((......((.(((((((((((.....((((......))))))).))))))))))..))))))))))))))))................ (-30.77 = -33.52 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:37 2006