Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,272,037 – 25,272,146 |
Length | 109 |
Max. P | 0.690489 |
Location | 25,272,037 – 25,272,146 |
---|---|
Length | 109 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 73.94 |
Mean single sequence MFE | -21.80 |
Consensus MFE | -14.53 |
Energy contribution | -15.01 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.12 |
Mean z-score | -1.40 |
Structure conservation index | 0.67 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25272037 109 - 27905053 AAAGUCGAUAGACGAUUGAACUGAACUGAACU-GAAUCCCGUCGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUUGAGUGUUUAA ...((((((....((((.(............)-.))))..)))))).(((((((((.........((.(((((.......)))))))........)))))))))...... ( -24.93) >DroPse_CAF1 133787 82 - 1 ---------------------------GAGCU-CAAGACGGGACACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCUCUUAACCGUUGAGUGUUUAA ---------------------------((((.-.....((.....))(((((((((.........((.(((((.......)))))))........))))))))))))).. ( -19.53) >DroWil_CAF1 215008 82 - 1 AAU----------GGUUG-----------------AGCCU-GGGAUGGCUUAGCGAGAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCGCUUAAGCCCCAAGUGUUUAA ...----------..(((-----------------(((((-.((..(((((((((..........((.(((((.......))))))).))).)))))))).)).)))))) ( -22.20) >DroAna_CAF1 125096 86 - 1 AA------------------------UGAGCUGGAAGCCUGUCGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUCGAGUGUUUAA ..------------------------(((((.((...))..(((((((.((((.(((........((.(((((.......)))))))))).)))))))))))..))))). ( -22.80) >DroPer_CAF1 134799 82 - 1 ---------------------------GAGCU-CAAGACGGGACACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCUCUUAACCGUUGAGUGUUUAA ---------------------------((((.-.....((.....))(((((((((.........((.(((((.......)))))))........))))))))))))).. ( -19.53) >consensus AA_________________________GAGCU_CAAGCCGGGAGACGGCUUAGCGGCAAAAUCAAUGACACAAUAAAUAUUUGUGCAGCCCUUAACCGUUGAGUGUUUAA ...............................................(((((((((.........((.(((((.......)))))))........)))))))))...... (-14.53 = -15.01 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:19 2006