| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,265,392 – 25,265,487 |
| Length | 95 |
| Max. P | 0.545757 |
| Location | 25,265,392 – 25,265,487 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.75 |
| Mean single sequence MFE | -19.58 |
| Consensus MFE | -11.54 |
| Energy contribution | -11.68 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25265392 95 - 27905053 CUACAACAACGAGGGGCGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUUUUAUAUAAGCCAG--------GAGACAGCAACAACA- ..............(((((((.....))))...(((((..((..((((((......))))))..))...))))).))).(--------....)..........- ( -17.80) >DroPse_CAF1 125333 92 - 1 --ACAACAACUAGCAACGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUUUUAUAUAAGCCAUGGCAAAGGCAGACG---------- --..........(((..((((..(((((((....)))))))..))))...)))......................(((........))).....---------- ( -17.80) >DroGri_CAF1 248639 90 - 1 --AUAACAGC-AGCAGCACAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAGUUUUACAAAAUAUUAUAUAAGCGCUGUU----------AGAACGAAAA- --.(((((((-.((((((((((((....).)))))))))(((..((((((......))))))..)))........))))))))----------).........- ( -24.30) >DroWil_CAF1 207128 92 - 1 ---CA-------GCAGUGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUAUUAUAUAAGCCAAG-UAGACGCAGACGGUUGCCAGG- ---..-------(((.(((((..(((((((....)))))))..)))))..))).......................((..(-(((.((....)).))))..))- ( -18.00) >DroAna_CAF1 118892 92 - 1 ---CAGCAGUCA-GGGCGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUUUUAUAUAAGCCAAC-------CAGACAGAGAGAACA- ---.....(((.-.(((((((.....))))...(((((..((..((((((......))))))..))...))))).)))...-------..)))..........- ( -18.30) >DroPer_CAF1 126349 102 - 1 --ACAACAACUGGCAACGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUUUUAUAUAAGCCAUGGCAAAGGCAGACGAAGGCAGAGG --.......(((.(...((((.....)))).....(((((((..((((((......)))))).............((....))....)))))))..).)))... ( -21.30) >consensus __ACAACAAC_AGCAGCGCAUUUCAAAUGCAAAUGUGUUUGUGGUGUAAAUGCAAUUUUACAAAAUUUUAUAUAAGCCAUG_______CAGACAGAAACAAAA_ ............(((..((((..(((((((....)))))))..))))...)))................................................... (-11.54 = -11.68 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:15 2006