Locus 9564

Sequence ID 3R_DroMel_CAF1
Location 25,264,947 – 25,265,043
Length 96
Max. P 0.995590
window15294

overview

Window 4

Location 25,264,947 – 25,265,043
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 93.33
Mean single sequence MFE -35.28
Consensus MFE -29.26
Energy contribution -31.46
Covariance contribution 2.20
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 0.83
SVM decision value 2.59
SVM RNA-class probability 0.995590
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25264947 96 - 27905053
ACUGCUGCUGCAAUCAGUGCCAGACACACAUGGGCUUAAGGCUUAGGGCUUGGGCUUUGGGCUUUAGGCCUGGCCAAAAUGUUUUGCCUACUUGCU
.........((((..((.((.(((((....(((((((((((((((((((....))))))))))))))))))).......))))).))))..)))). ( -36.70)
>DroSec_CAF1 122026 96 - 1
AUUUCUGCGGCAAUCAGUGCCAGACACACAUGGCCUUAAGGCUUAGGGCUGGGGCUUUGGGCUUUAGGCCUGGGCAAAAUGUUUUGCCUACUUGCU
......((((((.....))))..........(((((.((((((((((((....)))))))))))))))))((((((((....))))))))...)). ( -39.50)
>DroSim_CAF1 124195 96 - 1
AUUUCUGCGGCAAUCAGUGCCAGACACACAUGAGCUUAAGGCUUAGGGCUGGGGCUUUGGGCUUUAGGCCUGGCCAAAAUGUUUUGCCUACUUGCU
........(((((.((..(((((.((....)).((((((((((((((((....))))))))))))))))))))).....))..)))))........ ( -35.70)
>DroEre_CAF1 139197 96 - 1
AUUUCUGCGGCAAUCAGUGCCAGACACACAUGGGCUUAAGGCUUUGGGCUUGGGCUUUGGGCUUUAGGCCUGGCCAAAAUGUUUUGCCUACUUGCU
........(((((..((.((.(((((....((((((((((((((..(((....)))..)))))))))))))).......))))).))))..))))) ( -34.40)
>DroYak_CAF1 126771 89 - 1
AUUUCUGCGGCAAUCAGUGCCAGACACACAUGGGCUUAAGGCUUUGGGCUUGGG-------CUUUAGGCCUGGCCAAAAUGUUUUGCCUACUUGCU
........(((((..((.((.(((((......((((..((((((..(((....)-------))..))))))))))....))))).))))..))))) ( -30.10)
>consensus
AUUUCUGCGGCAAUCAGUGCCAGACACACAUGGGCUUAAGGCUUAGGGCUUGGGCUUUGGGCUUUAGGCCUGGCCAAAAUGUUUUGCCUACUUGCU
........(((((..((.((.(((((....(((((((((((((((((((....))))))))))))))))))).......))))).))))..))))) (-29.26 = -31.46 +   2.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:15 2006