Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 3,138,020 – 3,138,131 |
Length | 111 |
Max. P | 0.670181 |
Location | 3,138,020 – 3,138,131 |
---|---|
Length | 111 |
Sequences | 3 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 72.62 |
Mean single sequence MFE | -29.47 |
Consensus MFE | -17.83 |
Energy contribution | -17.73 |
Covariance contribution | -0.10 |
Combinations/Pair | 1.25 |
Mean z-score | -1.49 |
Structure conservation index | 0.61 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670181 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 3138020 111 - 27905053 AACAA--GCUUGA--CGUUAUAAUCGAGCU-UCUCGGCUAUCAAAUUCCCGCCACUCAGCUGGCGGAAGCGCGAGGGAAAAACUUUUCAAA-CUUCUUU-UGAAAUCUCGUAAGAAAU ...((--((((((--........)))))))-)(((((((.........((((((......)))))).))).)))).........(((((((-.....))-)))))..((....))... ( -28.80) >DroSec_CAF1 13891 117 - 1 AGAGAGAGAUUGUCACUUUGUAAUCGAGCUUUCUCGACUAUUAGAUUCCCGCGACUCAUCUGGAGGAA-CGUGAGGGAAAACGUUUUCAAGUCUUCUUUGUGAGAUUUCGCUAUAAAA .(((((((.(((............))).)))))))...............(((((((((..((((((.-..((((((......))))))..))))))..)))))...))))....... ( -30.70) >DroSim_CAF1 14635 109 - 1 AACAA--GCUUGA--ACGUUUAAUCGAGCU-GCUCGACAAUGAAAUUAUCGCCACUCAGCUGGCGGAAGUAUGAGGGAAAC--UUUUCUAG-CUUCUUU-CGAAAUCUCGAUAAAGGU .....--......--((.((((.(((((.(-..((((............(((((......)))))(((((..((((....)--)))....)-))))..)-))).).))))))))).)) ( -28.90) >consensus AACAA__GCUUGA__CCUUAUAAUCGAGCU_UCUCGACUAUCAAAUUCCCGCCACUCAGCUGGCGGAAGCGUGAGGGAAAA__UUUUCAAG_CUUCUUU_UGAAAUCUCGAUAAAAAU .......((((............(((((....)))))...........((((((......))))))))))((((((((((....)))).....(((.....))).))))))....... (-17.83 = -17.73 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:56:36 2006