Locus 9559

Sequence ID 3R_DroMel_CAF1
Location 25,253,842 – 25,253,957
Length 115
Max. P 0.891437
window15287

overview

Window 7

Location 25,253,842 – 25,253,957
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 93.13
Mean single sequence MFE -33.22
Consensus MFE -25.50
Energy contribution -26.66
Covariance contribution 1.16
Combinations/Pair 1.03
Mean z-score -2.24
Structure conservation index 0.77
SVM decision value 0.97
SVM RNA-class probability 0.891437
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25253842 115 - 27905053
AUGGCCAGCGAUUCGGAUUGCACCCUGGGGUGGAAUAAACUCCAUCCAAAGCCAGGUGAUGGCAGUAGAAAUCGUUAAAAUUUAGAACAUCUAAACGAAAGGCAAGAAAUAGUUG
...((((((((((...(((((.((((((((((((......)))))).....))))).)...)))))...)))))))....(((((.....))))).....)))............ ( -33.80)
>DroSec_CAF1 111098 115 - 1
AUGGCCAGCGAUUCGGAUUGCACCCUGGGGUGGAAUAAAGUCCAUCCAAAGCCAGGUGAUGGCAGUAGAAAUCGUUAAAAUUUAGAGCAUCUAAACGAAAGGCAAGAAAUACCUG
...((((((((((...(((((.((((((((((((......)))))).....))))).)...)))))...)))))))....(((((.....))))).....)))............ ( -33.60)
>DroSim_CAF1 113239 115 - 1
AUGGCCAGCGAUUCGGAUUGCACCCUGGGGUGGAAUAAAGUCCAUCCAAAGCCAGGUGAUGGCAGUAGAAAUCGUUAAAAUUUAGAACAUCUAAACGAAAGGCAAGAAAUACCUG
...((((((((((...(((((.((((((((((((......)))))).....))))).)...)))))...)))))))....(((((.....))))).....)))............ ( -33.60)
>DroEre_CAF1 127927 115 - 1
AUGGCCAGCGAUUCGGAUUGUACCCUGGGGUGGUAUAAAGUGCAUCCAAAGCCAGGUGAUGGCAGUUGGAAUCGUUAAAAUUUAGAGCAUCUAAACGAAAUUCAAGAAAUGGCUG
..((((((((((((.((((((.((((((..(((............)))...))))).)...)))))).))))))))....(((((.....)))))...............)))). ( -36.30)
>DroYak_CAF1 115404 115 - 1
AUGGCCAGCGAUUCGGAUUGUACCCUGGGGUUGAAUAAAGUCCAUCCAAAGCCAGGUGAUGGCCGUCGAAAUCGUUAAAAUUUAGAGCAUCUAAAAGAAGUGCCAGAAAUAGCUG
.(((((((((((((((.(..(..(((((..(((.............)))..)))))..)..))))....)))))))....(((((.....)))))....).)))).......... ( -28.82)
>consensus
AUGGCCAGCGAUUCGGAUUGCACCCUGGGGUGGAAUAAAGUCCAUCCAAAGCCAGGUGAUGGCAGUAGAAAUCGUUAAAAUUUAGAGCAUCUAAACGAAAGGCAAGAAAUAGCUG
...((((((((((...(((((.((((((((((((......)))))).....))))).)...)))))...)))))))....(((((.....))))).....)))............ (-25.50 = -26.66 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:08 2006