| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,252,370 – 25,252,471 |
| Length | 101 |
| Max. P | 0.506725 |
| Location | 25,252,370 – 25,252,471 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.74 |
| Mean single sequence MFE | -23.94 |
| Consensus MFE | -19.30 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.05 |
| SVM RNA-class probability | 0.506725 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25252370 101 + 27905053 CACGCCCACUCUAC----------CAAACAAAAAAAAAAAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ...(((........----------...................))).((((((...(((((....)))))((.(.(((....)))).))..)))))).............. ( -20.53) >DroSec_CAF1 109654 100 + 1 CACUCCCACUCCAC----------CAGGCCAAAA-AAAGAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ..............----------..((((....-........))))((((((...(((((....)))))((.(.(((....)))).))..)))))).............. ( -26.00) >DroSim_CAF1 111808 100 + 1 CACUCCCACUCCGC----------CAGGCCAAAA-AAAGAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ((((..(((...((----------((((((....-........)))).))))....(((((....))))))))..))))................................ ( -27.50) >DroEre_CAF1 126444 95 + 1 CACUCCCAC------------CCCAAAGCCCA---AA-AAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC .........------------......(((..---..-.....))).((((((...(((((....)))))((.(.(((....)))).))..)))))).............. ( -21.60) >DroYak_CAF1 113880 108 + 1 CACUCCCACUCUCACUUACACUCCAAAGCCCA---AAAAAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ......((((.((((.......(((..(((..---........)))..))).....(((((....))))))))).))))................................ ( -22.80) >DroAna_CAF1 105505 93 + 1 UAAGCCCAGU-UGC----------CAUCCG-------AAAAGCGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ........((-((.----------(..(((-------.....)))..((((((...(((((....)))))((.(.(((....)))).))..)))))).).))))....... ( -25.20) >consensus CACUCCCACUCUAC__________CAAGCCAA___AAAAAACAGGCCGUGGCACUUGCAACUUAUGUUGCGUGACAGUGACAACUUGACAAUGCCACAGACAACGUUCCGC ...............................................((((((...(((((....)))))((.(.(((....)))).))..)))))).............. (-19.30 = -19.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:07 2006