Locus 9554

Sequence ID 3R_DroMel_CAF1
Location 25,246,573 – 25,246,688
Length 115
Max. P 0.902975
window15279

overview

Window 9

Location 25,246,573 – 25,246,688
Length 115
Sequences 5
Columns 115
Reading direction reverse
Mean pairwise identity 89.57
Mean single sequence MFE -32.96
Consensus MFE -27.36
Energy contribution -27.40
Covariance contribution 0.04
Combinations/Pair 1.20
Mean z-score -1.76
Structure conservation index 0.83
SVM decision value 1.03
SVM RNA-class probability 0.902975
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25246573 115 - 27905053
CACACACAUGCUCAUCGAUGCACAGAUGGCUUUAUACGCGUGCCUGUGCUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUCCCCGUAGUCAUGCAUGUCAUGCAUG
......(((((....(.(((((...((((....((((((((((.(((((((..(((.......)))..))))))).)))...)))))))..)))).....))))))....))))) ( -32.00)
>DroSec_CAF1 103834 115 - 1
CACACACAUGCCCAUCGAUGCACAGAUGGCUUUAUACGCGUGCCUGUGCUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUACCCGUAGUCAUGCAUGUCAUGCAUG
......((((((((((........)))))........((((((.(((((((..(((.......)))..))))))).((((..((((......)))).))))))))))...))))) ( -33.70)
>DroEre_CAF1 115448 115 - 1
CACACACAUGCUCAUCGAUGCACAGAUGGCUUUAUACGCGUGCCUGUGCUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUUCCCGUAGCCAUGCAUGCCAUGCAUG
......(((((......(((((....(((((..((((((((((.(((((((..(((.......)))..))))))).)))...)))))))......)))))))))).....))))) ( -34.70)
>DroYak_CAF1 108068 115 - 1
CACACACAUGCUCAUCGAUGCACAGAUGGCUUUAUACGCGCGCCUGUGCUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUUCCCGUAGUCAUGCAUGGCAUGCAUG
......(((((....(.(((((...((((....((((((((((.(((((((..(((.......)))..))))))).))...))))))))..)))).....))))).)...))))) ( -37.60)
>DroAna_CAF1 99740 109 - 1
CACCCACCCACACACUGAUGCACAGAUGGCUUUAUGCGCCCGCCAGUGUUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUCCUCGUAGUCGUCCCCAUC------G
................((((....(((((((.(((((((.(((..((((((..(((.......)))..))))))..)))..))))))).......)))))))..))))------. ( -26.80)
>consensus
CACACACAUGCUCAUCGAUGCACAGAUGGCUUUAUACGCGUGCCUGUGCUUUCUUUUCUAUUUAAAUGGAGCACAAGUGAAGUGCGUAUCCCCGUAGUCAUGCAUGUCAUGCAUG
......(((((....((.((((....(((((..((((((.(((.(((((((..(((.......)))..))))))).)))....))))))......)))))))))))....))))) (-27.36 = -27.40 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:02 2006