Locus 9552

Sequence ID 3R_DroMel_CAF1
Location 25,239,918 – 25,240,008
Length 90
Max. P 0.919239
window15277

overview

Window 7

Location 25,239,918 – 25,240,008
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 82.09
Mean single sequence MFE -24.66
Consensus MFE -18.21
Energy contribution -18.37
Covariance contribution 0.16
Combinations/Pair 1.06
Mean z-score -2.13
Structure conservation index 0.74
SVM decision value 1.13
SVM RNA-class probability 0.919239
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25239918 90 + 27905053
CCACACUCCAGCUGCAGUUCAGUUCCAGUUCCAGUUCCUCAAAACGAGCUCAGCCAUGUGAGCUCCAAUCGUGGAGUGUUUUUACAGACA
..((((((((((((.....))))......................(((((((......)))))))......))))))))........... ( -24.10)
>DroSec_CAF1 97181 89 + 1
CCACACUCCAGCUGCAGCUCAGUUCCAGUUCCAGUUCCUCGG-AUGAGCUCAGCCAUGUGAGCUCCCAUCGUGGAGUGUUUUUACAGACA
..((((((((((((.((((.......)))).)))).....((-..(((((((......)))))))))....))))))))........... ( -28.90)
>DroSim_CAF1 98790 89 + 1
CCACACUCCAGCUGCAGCUCAGUUCCAGUUCCAGUUCCUCAG-AUGAGCUCAGCCAUGUGAGCUCCCAUCGUGGAGUGUUUUUACAGACA
..((((((((((((.((((.......)))).))))......(-(((((((((......)))))))..))).))))))))........... ( -28.50)
>DroEre_CAF1 105660 71 + 1
ACACACUCCAGCUGGAGUUCAGUUC------CAGUUCUUCAA-ACGAGCUCAGCCA------------UCCGGGAGUGUUUUCACAGACA
..(((((((.((((.(((((.(((.------..........)-)))))))))))..------------....)))))))........... ( -19.70)
>DroYak_CAF1 101206 77 + 1
ACACACUCCAGCUGGAGUUCAGUUCCAGUUCCAGUUCCUCAA-ACGAGCUCAGCCA------------UCGGGGAGUGUUUUUACAGCCA
..(((((((((((((((.....))))))))..(((((.....-..)))))......------------....)))))))........... ( -22.10)
>consensus
CCACACUCCAGCUGCAGUUCAGUUCCAGUUCCAGUUCCUCAA_ACGAGCUCAGCCAUGUGAGCUCC_AUCGUGGAGUGUUUUUACAGACA
..((((((((((((.(((((.........................))))))))).................))))))))........... (-18.21 = -18.37 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:37:00 2006