Locus 9551

Sequence ID 3R_DroMel_CAF1
Location 25,239,384 – 25,239,484
Length 100
Max. P 0.512248
window15276

overview

Window 6

Location 25,239,384 – 25,239,484
Length 100
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 82.42
Mean single sequence MFE -29.67
Consensus MFE -19.34
Energy contribution -20.25
Covariance contribution 0.91
Combinations/Pair 1.23
Mean z-score -1.62
Structure conservation index 0.65
SVM decision value -0.04
SVM RNA-class probability 0.512248
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 25239384 100 - 27905053
GGCGGUAUUAAAUCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUUGCUCGAGUGCUG----GACAACACUUGGCUGGGCUGGCAACUCCA
((.(((.....))))).((((((((((....)))))))))).....((.(((((..((.((.((((((...----.....))))))))...))..).)))).)) ( -28.60)
>DroSec_CAF1 96616 104 - 1
GGCGAUAUUAAAUCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUCGCUCCAGUGCUGGAUGGACAACACUUGGCUGGACUGGCAACUCGA
((.(((.....))))).((((((((((....))))))))))....((((.((((..(((.(.((((((.((......)).))).)))..))))..).))))))) ( -30.90)
>DroSim_CAF1 98226 104 - 1
GGCGGUAUUAAAUCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUCGCUCGAGUGCUGGAUGGACAACACUUGGCUGGACGGGCAACUCGA
((.(((.....))))).((((((((((....))))))))))....((((.(((((.(((((.((((((.((......)).))))))))..))).)).))))))) ( -31.50)
>DroEre_CAF1 105064 100 - 1
GGCGGCAUUAAAGCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUCGCUCGAGUGGUG----GACAACACUUGGCUGGGCUGGCAGCUCAA
(((.((.....((((((((((((((((....))))))))))..................((.((((((...----.....)))))))))))))).)).)))... ( -37.30)
>DroYak_CAF1 100587 100 - 1
GGCGGUAUUAAAUCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUCGCUCGAGUGGUG----GACAACACUGGGCUGGACUGGCAGCUCAA
((.(((.....))))).((((((((((....))))))))))....((((.((((..(((((((.((((...----.....))))))))..)))..).))))))) ( -32.30)
>DroPer_CAF1 102054 88 - 1
GCUCGGAUUAAAUUCUGGAUUGAAUGAGUAAUUAUCCAAUUAAAACUCAAGUUCC--UCG-UUGAACGGUG----GACACUGGCU---------GGCUGGUUGA
...((((......))))(((((.((((....)))).))))).........((((.--(((-.....))).)----)))((..(..---------..)..))... ( -17.40)
>consensus
GGCGGUAUUAAAUCCCGGAUUGGAUGAGUAAUUAUCCAAUUAAAAUUGAAGUUUUGGUCGCUCGAGUGCUG____GACAACACUUGGCUGGACUGGCAACUCGA
.................((((((((((....))))))))))........((((((((((((.((((((.((......)).))))))))..)))))).))))... (-19.34 = -20.25 +   0.91)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:59 2006