Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,231,059 – 25,231,162 |
Length | 103 |
Max. P | 0.567692 |
Location | 25,231,059 – 25,231,162 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 86.60 |
Mean single sequence MFE | -32.25 |
Consensus MFE | -25.61 |
Energy contribution | -25.25 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567692 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25231059 103 - 27905053 AUUCCUCGUUUUAGCAGAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGAUGUCUAGCUUUCCAGCCAACAGGCAAAAGUUACUGU---UG---UUAUU .......((..((((((........-.(((((..((((((((....)))))))).....))))).(((((((...(((....))).)))))))))))---))---..)). ( -29.60) >DroPse_CAF1 94467 108 - 1 AUUCGUCGUUUUAGCAGAGCAAACA-AAUGUCAAGCGUUGCGUAUACGCAACGUGAGCCGUUGUCUAGCUUUUCAGCCGCAAGGCAAA-GUUGCUGCCAAUGUGGUUGUU ...............(((((..(((-(..((...((((((((....))))))))..))..))))...))))).((((((((.((((..-.....))))..)))))))).. ( -35.20) >DroSec_CAF1 89507 103 - 1 AUUCUCCGUUUUAGCAGAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCUUUCCAGCCACCAGGCAAAAGUUACUGU---UG---UCAUU ...........((((((.....(((-..((.(..((((((((....))))))))..).)).))).(((((((...(((....))).)))))))))))---))---..... ( -27.50) >DroEre_CAF1 92262 110 - 1 AUUCCUCAUUUUAGCAGAGCAAACAAAACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCCUUCCAGCCAGCAGGCAAAAGCUACUGUUGUUGUUGUUCUU .......((..(((((((((..............((((((((....))))))))..(((((((.((........)).)))).)))....))).))))))..))....... ( -34.10) >DroYak_CAF1 93277 106 - 1 AUUCCUCAUUUUAGCAAAGCAAACA-AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCCUGCCAGGCACCAGGCAAAAGCUACUGCUGUUG---UUAUU ...........((((((((((....-........((((((((....)))))))).(((...(((((.(((.....)))...)))))...)))..)))).)))---))).. ( -31.90) >DroPer_CAF1 95462 108 - 1 AUUCGUCGUUUUAGCAGAGCAAACA-AAUGUCAAGCGUUGCGUAUACGCAACGUGAGCCGUUGUCUAGCUUUUCAGCCGCAAGGCAAA-GUUGCUGCCAAUGUGGUUGUU ...............(((((..(((-(..((...((((((((....))))))))..))..))))...))))).((((((((.((((..-.....))))..)))))))).. ( -35.20) >consensus AUUCCUCGUUUUAGCAGAGCAAACA_AACGUCAAGCGUUGCGUAUACGCAACGUGAGCCGCUGUCUAGCUUUCCAGCCACCAGGCAAAAGUUACUGC___UG___UUAUU .............(((((((..(((...((.(..((((((((....))))))))..).)).)))...........(((....)))....))).))))............. (-25.61 = -25.25 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:55 2006