| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 25,230,824 – 25,230,914 |
| Length | 90 |
| Max. P | 0.778354 |
| Location | 25,230,824 – 25,230,914 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.00 |
| Mean single sequence MFE | -33.28 |
| Consensus MFE | -15.15 |
| Energy contribution | -16.80 |
| Covariance contribution | 1.65 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.46 |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.778354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25230824 90 + 27905053 AGAACGG--GCGACGAUGUUGCCAGUGCUGUUAGCAGCAACUAUUG------------CCUCAUCCUUCUGGCAGCUGCCGCAGCACGCGCAGGCAAACAAACU- ......(--(((((...)))))).(((((((..(((((......((------------((..........))))))))).)))))))((....)).........- ( -32.40) >DroPse_CAF1 94156 87 + 1 AGAGCAGAGUCUUCUUUGCUGC-UGUGCUGCU----------AU-GCU------GCUGCCUCAUCCGUCUGACAGCUGCCACAGCACGCGCCAGCAAAAAUAGUU ..(((((((....)))))))((-(((((((((----------..-((.------((((..(((......))))))).))...)))).))).)))).......... ( -30.50) >DroSec_CAF1 89260 102 + 1 AGAACGG--GCGACGAUGUUGCCAGUGCUGUUAGCGGCAACUAUUGCCAUUGCCGUUGCCUCAUCCUUCUGGCAGCUGCCGCAGCACGCGCAGGCAAACAAACU- ....((.--....)).(((((((.((((((((.((((((......((....)).((((((..........)))))))))))))))).)))).))).))))....- ( -38.30) >DroEre_CAF1 92022 95 + 1 AGCAGCC--GCGACGAUGUUGCCAGUCCUGUCAGCGGCAACUAUUGCC-------UUGCCUCAUCCUUCUGGCAGCUGCCACAGCACGCGCAGGCAAACAAACU- ....(((--(((.((.(((((.......((.((((((((.....))))-------.((((..........)))))))).)))))))))))).))).........- ( -32.01) >DroYak_CAF1 93030 96 + 1 AGAAAUC--GCGACGUUGUUGCCAGUGCUGUUAGUGGCAACUAUUGCC------GUUGCCUCAUCCUUCUGGCAGCUGCCACAGCACGCGCAGGCAAACAAACU- .......--.....(((.(((((.((((((((.((((((.........------((((((..........)))))))))))))))).)))).)))))...))).- ( -35.60) >DroPer_CAF1 95138 95 + 1 AGAGCAGAGUCUUCUGUGCUGC-UGUGCUGCUAU--GCUGCUAU-GCU------GCUGCCUCAUCCGUCUGACAGCUGCCACAGCACGCGCCAGCAAAAAUAGUU ..((((.((....)).))))((-((.((.((..(--((((....-((.------((((..(((......))))))).))..))))).)))))))).......... ( -30.90) >consensus AGAACAG__GCGACGAUGUUGCCAGUGCUGUUAGCGGCAACUAUUGCC______GUUGCCUCAUCCUUCUGGCAGCUGCCACAGCACGCGCAGGCAAACAAACU_ ................((((((..(((((((.....(((.....))).......((((((..........))))))....)))))))..)).))))......... (-15.15 = -16.80 + 1.65)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:54 2006