Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 25,221,384 – 25,221,486 |
Length | 102 |
Max. P | 0.907322 |
Location | 25,221,384 – 25,221,486 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 98.24 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -17.52 |
Energy contribution | -17.28 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.04 |
Mean z-score | -1.55 |
Structure conservation index | 0.93 |
SVM decision value | 1.05 |
SVM RNA-class probability | 0.907322 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 25221384 102 - 27905053 AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU ..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50) >DroSec_CAF1 79642 102 - 1 AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU ..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50) >DroSim_CAF1 79994 102 - 1 AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU ..............(((........))).................((((((....))))))(((((((....(((((.....)))))...)))))))..... ( -18.50) >DroEre_CAF1 82801 102 - 1 AAUUCACUAAAUUCGACAGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUC ..(((.....((((((.(((((((((...............)))))(((((....))))))))).)))))).(((((.....)))))....)))........ ( -19.56) >DroYak_CAF1 82773 102 - 1 AAUUCACUAAAUUCGACAGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUC ..(((.....((((((.(((((((((...............)))))(((((....))))))))).)))))).(((((.....)))))....)))........ ( -19.56) >consensus AAUUCACUAAAUUCGGCUGCCAAAUGCUUCACAUUCUCUAACAUUUAUUUGACGUCAAAUGGCUUUCGAAUGAUCGACCUCAUCGGUAAACGAAAGCAUUUU ..(((.....((((((..((((((((...............)))))(((((....))))))))..)))))).(((((.....)))))....)))........ (-17.52 = -17.28 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 13:36:51 2006